View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4756-Insertion-4 (Length: 414)

Name: NF4756-Insertion-4
Description: NF4756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4756-Insertion-4
NF4756-Insertion-4
[»] chr8 (1 HSPs)
chr8 (11-414)||(29157273-29157676)
[»] chr2 (9 HSPs)
chr2 (7-159)||(2596228-2596380)
chr2 (200-317)||(2583668-2583785)
chr2 (7-159)||(2581539-2581691)
chr2 (244-373)||(2596498-2596628)
chr2 (7-132)||(2589153-2589278)
chr2 (155-224)||(2596431-2596500)
chr2 (202-263)||(2584987-2585051)
chr2 (155-209)||(2581743-2581797)
chr2 (30-75)||(2584824-2584869)
[»] chr7 (2 HSPs)
chr7 (191-373)||(46769773-46769964)
chr7 (30-118)||(46769615-46769703)
[»] chr3 (2 HSPs)
chr3 (7-107)||(21642431-21642531)
chr3 (7-103)||(21620765-21620861)
[»] chr6 (1 HSPs)
chr6 (21-135)||(30399358-30399472)
[»] chr4 (2 HSPs)
chr4 (30-75)||(19359417-19359462)
chr4 (30-75)||(35767262-35767307)


Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 414
Target Start/End: Original strand, 29157273 - 29157676
Alignment:
Q  11 ggactggaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttgtgggat 110  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29157273 ggactagaattatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttgtgggat 29157372  T
Q  111 ggttggaggaaaggaagaaaggaggcttttggtgctgcaatagctttaggttttttcggggacattggaagcaactcacaatttaataattgttttgttt 210  Q
    | |||||||||||||||||| |||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29157373 gattggaggaaaggaagaaatgagctttttggtgctgcaatagctttaggtttcttcggggacattggaagcaactcacaatttaataattgttttgttt 29157472  T
Q  211 tataactcttctgtttgtttggaaccatgtgaatgtcactaatacatttatgcattttagtccttttccttattcatttctttacatgccatctctcttc 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29157473 tataactcttctgtttgtttggaaccatgtgaatgtcactaatacatttatgcattttagtccttttccttattcatttctttacatgccatctctcttt 29157572  T
Q  311 taatttttcatccaattcaaccattcaactttcagtttttccttgtttcttttatgtaattgtggtttgtgtcatgtcatgggtatatgtctatggaaag 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29157573 taatttttcatccaattcaaccattcaactttcagtttttccttgtttcttttatgtaattgtggtttgtttcatgtcatgggtatatgtctatggaaag 29157672  T
Q  411 ccta 414  Q
    ||||    
T  29157673 ccta 29157676  T

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Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 7 - 159
Target Start/End: Original strand, 2596228 - 2596380
Alignment:
Q  7 aagcggactggaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttgtg 106  Q
    ||||||||| ||| |||||||  |||||||||||||||||||||||||| ||| ||||| |||||||||  |||||||||||||||||||||||||| ||    
T  2596228 aagcggactagaattatcgatgaaatacaatggttctctgccaaggtttatgtcgaaagtttggtttctgacatttagaaagcacgtcaagacatttatg 2596327  T
Q  107 ggatggttggaggaaaggaagaaaggaggcttttggtgctgcaatagctttag 159  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||||||||||    
T  2596328 ggatggttggaggaaaggaagaaaggagctttttggtgctacaatagctttag 2596380  T

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Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 2583668 - 2583785
Alignment:
Q  200 ttgttttgttttataactcttctgtttgtttggaaccatgtgaatgtcactaatacatttatgcattttagtccttttccttattcatttctttacatgc 299  Q
    |||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2583668 ttgttttgttttgtaactcttctctttgtttggaaacatgtgaatgtcactaatacatttatgcattttagtccttttccttattcatttatttacatgc 2583767  T
Q  300 catctctcttctaatttt 317  Q
    |||||||||| |||||||    
T  2583768 catctctcttttaatttt 2583785  T

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Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 7 - 159
Target Start/End: Original strand, 2581539 - 2581691
Alignment:
Q  7 aagcggactggaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttgtg 106  Q
    ||||||||| ||| |||| ||  |||| ||||||||| || |||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||    
T  2581539 aagcggactagaattatccatgaaatagaatggttctttgtcaaggtttatgttgaaagcttggtttctgacatttagaaagcacgtcaagacatttgtg 2581638  T
Q  107 ggatggttggaggaaaggaagaaaggaggcttttggtgctgcaatagctttag 159  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||||||||||    
T  2581639 ggatggttggaggaaaggaagaaaggagctttttggtgctacaatagctttag 2581691  T

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Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 244 - 373
Target Start/End: Original strand, 2596498 - 2596628
Alignment:
Q  244 tgtcactaatacatttatgcattttagtccttttccttattcatttctttacatgccatctctcttctaatttttcatccaattcaaccattcaactttc 343  Q
    |||||||||||||||||||| ||| | ||||||||||| ||||||| ||||||| | ||||||||| |||||||||||||||||||||||||| ||||||    
T  2596498 tgtcactaatacatttatgcctttaaatccttttccttgttcatttttttacattctatctctcttttaatttttcatccaattcaaccattcgactttc 2596597  T
Q  344 agtttttccttgtttctttt-atgtaattgt 373  Q
    ||||||||| |||||||||| ||||||||||    
T  2596598 agtttttccatgtttcttttaatgtaattgt 2596628  T

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Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 2589153 - 2589278
Alignment:
Q  7 aagcggactggaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttgtg 106  Q
    ||||||||| ||| |||| ||  |||||||||||||||| ||||||||| ||||||||| |||||||||   ||||||||||||||||||||||||||||    
T  2589153 aagcggactagaattatcaatgaaatacaatggttctctaccaaggtttatgttgaaagtttggtttctgatatttagaaagcacgtcaagacatttgtg 2589252  T
Q  107 ggatggttggaggaaaggaagaaagg 132  Q
    |||||||| |||||||  ||||||||    
T  2589253 ggatggttagaggaaaaaaagaaagg 2589278  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 2596431 - 2596500
Alignment:
Q  155 tttaggttttttcggggacattggaagcaactcacaatttaataattgttttgttttataactcttctgt 224  Q
    ||||||||| ||||  |||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  2596431 tttaggtttcttcgaagacatttgaagcaactcacaatgtaataattgttttgttttataactcttctgt 2596500  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 2584987 - 2585051
Alignment:
Q  202 gttttgttttataactctt---ctgtttgtttggaaccatgtgaatgtcactaatacatttatgc 263  Q
    |||||||||||||||||||   |||||||||||||| ||||| |||||||||||| |||||||||    
T  2584987 gttttgttttataactcttcttctgtttgtttggaaacatgtaaatgtcactaattcatttatgc 2585051  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 2581743 - 2581797
Alignment:
Q  155 tttaggttttttcggggacattggaagcaactcacaatttaataattgttttgtt 209  Q
    ||||||||| ||||  |||||| |||||||||||||||||||||||| |||||||    
T  2581743 tttaggtttcttcgaagacatttgaagcaactcacaatttaataatttttttgtt 2581797  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 2584824 - 2584869
Alignment:
Q  30 aatacaatggttctctgccaaggtttttgttgaaagcttggtttct 75  Q
    ||||||||||||||||| ||||| || ||||||||| |||||||||    
T  2584824 aatacaatggttctctgtcaaggcttatgttgaaagtttggtttct 2584869  T

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Target: chr7 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 191 - 373
Target Start/End: Original strand, 46769773 - 46769964
Alignment:
Q  191 atttaataattgttttgttttataactctt---ctgtttgtttggaaccatgtgaatgtcactaatacatttatgcattttagtccttttccttattcat 287  Q
    ||||||||||| ||||||||||||||||||   |||||||||||||| |||||| ||||||||| ||||||||||| ||||||||| | |||||||||||    
T  46769773 atttaataattattttgttttataactcttcttctgtttgtttggaagcatgtggatgtcactagtacatttatgccttttagtccatatccttattcat 46769872  T
Q  288 ttctttacatgccatctctct-----tctaatttttcatccaattcaaccattcaac-tttcagtttttccttgtttcttttatgtaattgt 373  Q
    ||||||| ||| ||||||| |     | ||||||| |||||||||||| |||||||| ||||||||||||||| ||||||  ||||||||||    
T  46769873 ttctttatatgtcatctctattttaatttaattttacatccaattcaatcattcaacttttcagtttttccttctttcttcaatgtaattgt 46769964  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 46769615 - 46769703
Alignment:
Q  30 aatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttgtgggatggttggag 118  Q
    |||||| |||||||||||||||||||  |||||||| || ||||||  ||||||||||||| ||||||||||||||||||||| |||||    
T  46769615 aatacattggttctctgccaaggtttacgttgaaagttttgtttcttacatttagaaagcatgtcaagacatttgtgggatggctggag 46769703  T

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Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 21642531 - 21642431
Alignment:
Q  7 aagcggactggaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttgtg 106  Q
    ||||||||| ||| |||||||  |||||||||||||||||||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||    
T  21642531 aagcggactagaattatcgatgaaatacaatggttctctgccaaggtttatgttgaaagtttggtttctgacatttagaaagcacgtcaagacatttgtg 21642432  T
Q  107 g 107  Q
    |    
T  21642431 g 21642431  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 21620861 - 21620765
Alignment:
Q  7 aagcggactggaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacattt 103  Q
    ||||||||| ||| |||||||  |||||||||||||||||||||||||| ||||||||| |||||||||  ||||||||||||||||||||||||||    
T  21620861 aagcggactagaattatcgatgaaatacaatggttctctgccaaggtttatgttgaaagtttggtttctgacatttagaaagcacgtcaagacattt 21620765  T

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Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 30399358 - 30399472
Alignment:
Q  21 tatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttgtgggatggttggagga 120  Q
    |||||||  |||||||||||||||| ||||||||| ||||||||| |||||||||  ||||||||||||||||||||||||||||| | ||||| || ||    
T  30399358 tatcgatgaaatacaatggttctctaccaaggtttatgttgaaagtttggtttctgacatttagaaagcacgtcaagacatttgtgcgctggttagatga 30399457  T
Q  121 aaggaagaaaggagg 135  Q
    ||||||||| |||||    
T  30399458 aaggaagaatggagg 30399472  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 19359417 - 19359462
Alignment:
Q  30 aatacaatggttctctgccaaggtttttgttgaaagcttggtttct 75  Q
    |||| |||||||||||| ||||| || |||||||||||||||||||    
T  19359417 aataaaatggttctctgtcaaggcttatgttgaaagcttggtttct 19359462  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 35767262 - 35767307
Alignment:
Q  30 aatacaatggttctctgccaaggtttttgttgaaagcttggtttct 75  Q
    |||||| ||||||||| ||||||||| ||| |||||||||||||||    
T  35767262 aatacactggttctctaccaaggtttatgtcgaaagcttggtttct 35767307  T

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