View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4756-Insertion-6 (Length: 407)
Name: NF4756-Insertion-6
Description: NF4756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4756-Insertion-6 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 8 - 407
Target Start/End: Complemental strand, 13628234 - 13627835
Alignment:
| Q |
8 |
tgtacctcacaataaccaccactttaatttcctttactgttatcatacgtttctacttctcctgatattgttctaagttcctttaaaaccctagtagcct |
107 |
Q |
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| T |
13628234 |
tgtacctcacaataaccaccactttaatttcctttactgttatcatacgtttctacttctcctgatattgttctaagttcctttaaaaccctagtagcct |
13628135 |
T |
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| Q |
108 |
acaccaacaaatagaattaagccattatcaccatctttcaaatagtttcaaaatcttattctaaacttgtgtagcttcgaagtttgaatccttccactat |
207 |
Q |
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| T |
13628134 |
acaccaacaaatagaattaagccattatcaccatctttcaaatagtttcaaaatcttattctaaacttgtgtagcttcgaagtttgaattcttccactat |
13628035 |
T |
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| Q |
208 |
tgcaagcaatttgtgcggctttgtagtgtgctgctgttaggagggaagtgcctaaggtaaggcttttttcccatacatttttaccaaatgctaaattgat |
307 |
Q |
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| T |
13628034 |
tgcaagcaatttgtgcggctttgtagtgtgctgctgttaggagggaagtgcctaaggtaaggcttttttcccatacatttttaccaagtgctaaattgat |
13627935 |
T |
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| Q |
308 |
attgaatctcaaaagggtgctctacataaaaaatttggcaaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtcatttcg |
407 |
Q |
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| T |
13627934 |
attgaatctcaaaagggtgctctacataataaatttggcaaagattcatatttgtgtttttcttgcataatgtcaaataaaatgtttaatagtcatttcg |
13627835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 9416284 - 9416179
Alignment:
| Q |
134 |
atcaccatctttcaaatagtttcaaaatcttattctaaacttgtgtagcttcgaagtttgaatccttccactattgcaagcaatttgtgcggctttgtag |
233 |
Q |
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| T |
9416284 |
atcaccatctttcaaataatttccaagtcttattccaaacttg-gtagctttaaattttgaatctttcccatgttgcaagcattttctgcggctttgtag |
9416186 |
T |
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| Q |
234 |
tgtgctg |
240 |
Q |
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| T |
9416185 |
tatgctg |
9416179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 354
Target Start/End: Complemental strand, 22763493 - 22763439
Alignment:
| Q |
300 |
aaattgatattgaatctcaaaagggtgctctacataaaaaatttggcaaagattc |
354 |
Q |
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| T |
22763493 |
aaattgatattgaatctcaaaagggtgctctccatatattttttggcaaagattc |
22763439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 401
Target Start/End: Original strand, 4634017 - 4634072
Alignment:
| Q |
346 |
caaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtc |
401 |
Q |
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| T |
4634017 |
caaagattcatatttgtatttttcttgcataatgtcatatgaaatgtttaatagtc |
4634072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 401
Target Start/End: Original strand, 23971075 - 23971130
Alignment:
| Q |
346 |
caaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtc |
401 |
Q |
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| T |
23971075 |
caaagattcatacttgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtc |
23971130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 9021814 - 9021868
Alignment:
| Q |
346 |
caaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagt |
400 |
Q |
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| T |
9021814 |
caaagattcatacttgtgttcttcttgcacaatgtcaaatgaaatgtttaatagt |
9021868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 407
Target Start/End: Complemental strand, 15151370 - 15151313
Alignment:
| Q |
350 |
gattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtcatttcg |
407 |
Q |
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| T |
15151370 |
gatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtcttttcg |
15151313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 350 - 401
Target Start/End: Complemental strand, 16822060 - 16822009
Alignment:
| Q |
350 |
gattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtc |
401 |
Q |
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| T |
16822060 |
gattcatacttgtgtttttcttgtacaatgtcaaatgaaatgtttaatagtc |
16822009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 401
Target Start/End: Complemental strand, 19569648 - 19569593
Alignment:
| Q |
346 |
caaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtc |
401 |
Q |
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| T |
19569648 |
caaaaattcatatttgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtc |
19569593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 401
Target Start/End: Original strand, 17405187 - 17405237
Alignment:
| Q |
351 |
attcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtc |
401 |
Q |
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| T |
17405187 |
attcatacttgtgttcttcttgcacaatgtcaaatgaaatgtttaatagtc |
17405237 |
T |
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