View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4756-Insertion-8 (Length: 383)
Name: NF4756-Insertion-8
Description: NF4756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4756-Insertion-8 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 383
Target Start/End: Original strand, 355606 - 355981
Alignment:
| Q |
8 |
attgaatacaagaaaaatagtattattgtattaggattaacaatatggccacttggaagtatatcacctttaattgcttgctttctctcaaagggtattg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
355606 |
attgaatacaagaaaaatagtattattgtattaggattaacaatatggccacttggaagtatatcacctttaattgcttgctttctctcaaagggtattg |
355705 |
T |
|
| Q |
108 |
gaggaaaaagccttagagcttcacatatagcaccatgaagataaactagctttttcaactcatcaatccctaatttcttttcaatattgatggtcccaaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
355706 |
gaggaaaaagccttagagcttcacatatagcaccatgaagataaactagctttttcaactcatcaatccctaatttcttttcaatattgatggtcccaaa |
355805 |
T |
|
| Q |
208 |
attttctttaatctcctcaagaatcttagcctccactaaagggtgtgtagcaatgagatagaagagccatgtaagcgctgaagttatagtatccctcccc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
355806 |
attttctttaatctcctcaagaatcttagcctccactaaagggtgtgtagcaatgagatagaagagccatgtaagcgctgaagttatagtatctctcccc |
355905 |
T |
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| Q |
308 |
gctacaaaaagattgaatgcaacatccctcaaaaacttatcatcatgcattactacttgtgaccccttttcttctt |
383 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
355906 |
gctacaaagagattgaatgcaacatccctcaaaaacttatcatcatgcattactacttgtgaccccttttcttctt |
355981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 383
Target Start/End: Original strand, 346947 - 347322
Alignment:
| Q |
8 |
attgaatacaagaaaaatagtattattgtattaggattaacaatatggccacttggaagtatatcacctttaattgcttgctttctctcaaagggtattg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
346947 |
attgaatacaagaaaaatagtattattgtattaggattaacaatatggccacttggaagtatatcacctttaattgcttgctttctctcaaagggtattg |
347046 |
T |
|
| Q |
108 |
gaggaaaaagccttagagcttcacatatagcaccatgaagataaactagctttttcaactcatcaatccctaatttcttttcaatattgatggtcccaaa |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||| |
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| T |
347047 |
gaggaaaaagccttagagcttcacatatagcaccatgaagataaactagctttttcaactcataaatccctaatttcttttcaatgttaatggtcccaaa |
347146 |
T |
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| Q |
208 |
attttctttaatctcctcaagaatcttagcctccactaaagggtgtgtagcaatgagatagaagagccatgtaagcgctgaagttatagtatccctcccc |
307 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||| |
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| T |
347147 |
attttctttaatctgctcaagaatcttagcctccactaaagggtgtgtagcaataagatataaaagccatgtaagcgctgaagttatagtatctctcccg |
347246 |
T |
|
| Q |
308 |
gctacaaaaagattgaatgcaacatccctcaaaaacttatcatcatgcattactacttgtgaccccttttcttctt |
383 |
Q |
| |
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|||||||||||||||||||| ||||| || | ||||||||||||||| | |||||||||||| ||||| ||||||| |
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| T |
347247 |
gctacaaaaagattgaatgcgacatctcttagaaacttatcatcatgtactactacttgtgagcccttctcttctt |
347322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 8 - 381
Target Start/End: Complemental strand, 377555 - 377179
Alignment:
| Q |
8 |
attgaatacaagaaaaatagtattattgtattaggattaacaatatggccacttggaagtatatcacctttaattgcttgctttctctcaaagggtattg |
107 |
Q |
| |
|
||||||||||| |||||| ||| |||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||| ||| | |||||||||||| | |
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| T |
377555 |
attgaatacaaagaaaataatataattgtatttggattaataatatgaccacttggaagtacatcacctttaattgctttcttgcgctcaaagggtatag |
377456 |
T |
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| Q |
108 |
gaggaaaaagccttagagcttcacatatagcaccatgaagataaactagctttttcaactcatcaatccctaatttcttt---tcaatattgatggtccc |
204 |
Q |
| |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||| |||||| |||||| |||||||| ||||| || |
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| T |
377455 |
gaggaaaaagccttatagcctcacatatagcaccatgaagataaactagcttcttcacttcatcaacccctaacttcttttgatcaatattaatggttcc |
377356 |
T |
|
| Q |
205 |
aaaattttctttaatctcctcaagaatcttagcctccactaaagggtgtgtagcaatgagatagaagagccatgtaagcgctgaagttatagtatccctc |
304 |
Q |
| |
|
||||| |||||||||||| ||||||||||| | || |||||||| |||||||||| |||||| || | ||||||||||||||||||||||||||| || |
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| T |
377355 |
aaaatgttctttaatctcttcaagaatcttggtttctactaaaggatgtgtagcaacgagataaaataaccatgtaagcgctgaagttatagtatctctt |
377256 |
T |
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| Q |
305 |
cccgctacaaaaagattgaatgcaacatccctcaaaaacttatcatcatgcattactacttgtgaccccttttcttc |
381 |
Q |
| |
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|| |||||||| |||||||| ||| |||| || | |||||| || ||||| |||||||||||| ||||| ||||| |
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| T |
377255 |
ccggctacaaagagattgaaagcagcatctcttagaaacttgtcgtcatgttgtactacttgtgatcccttctcttc |
377179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 56 - 333
Target Start/End: Complemental strand, 341791 - 341514
Alignment:
| Q |
56 |
ccacttggaagtatatcacctttaattgcttgctttctctcaaagggtattggaggaaaaagccttagagcttcacatatagcaccatgaagataaacta |
155 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||||||||||| |||||||| ||||||||||||| || |||||||||||||||||||||||||| | |
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| T |
341791 |
ccacttggaagtatatcgggtttaaccgcttcctttctctcaaaaggtattggtggaaaaagccttaatgcctcacatatagcaccatgaagataaacaa |
341692 |
T |
|
| Q |
156 |
gctttttcaactcatcaatccctaatttcttttcaatattgatggtcccaaaattttctttaatctcctcaagaatcttagcctccactaaagggtgtgt |
255 |
Q |
| |
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||||||||| ||||||| | ||| || | | || || ||||||||||| ||||| ||||||||||| || ||||||||||||||||| |
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| T |
341691 |
gctttttcacatcatcaacacttaaaatccaaggcttctctttgtatccgaaattttctttgatctcttcaagaatcttggcttccactaaagggtgtgt |
341592 |
T |
|
| Q |
256 |
agcaatgagatagaagagccatgtaagcgctgaagttatagtatccctccccgctacaaaaagattgaatgcaacatc |
333 |
Q |
| |
|
||||| ||||| || |||||||||||||| |||||||| ||||| || || |||||||| |||||||||||| |||| |
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| T |
341591 |
agcaacaagataaaatagccatgtaagcgcagaagttatggtatctcttccagctacaaagagattgaatgcagcatc |
341514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 56 - 333
Target Start/End: Complemental strand, 337753 - 337476
Alignment:
| Q |
56 |
ccacttggaagtatatcacctttaattgcttgctttctctcaaagggtattggaggaaaaagccttagagcttcacatatagcaccatgaagataaacta |
155 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||| ||||| || ||||||||||||| || ||||||||||| || ||||||||||| | |
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|
| T |
337753 |
ccacttggaagtatatcggcttcaattgcttgctttctctcaaaaggtataggcggaaaaagccttaacgcctcacatatagcgccgtgaagataaacaa |
337654 |
T |
|
| Q |
156 |
gctttttcaactcatcaatccctaatttcttttcaatattgatggtcccaaaattttctttaatctcctcaagaatcttagcctccactaaagggtgtgt |
255 |
Q |
| |
|
||||||||| |||||||| | ||| || | | || |||||||||||||| ||||| |||| |||||| || ||||| ||||| ||||| |
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| T |
337653 |
gctttttcacctcatcaacacttaaaatccaaggcttctctttgtgtccaaaattttcttttatctcttcaacaatcttggcttccaccaaaggatgtgt |
337554 |
T |
|
| Q |
256 |
agcaatgagatagaagagccatgtaagcgctgaagttatagtatccctccccgctacaaaaagattgaatgcaacatc |
333 |
Q |
| |
|
||| | ||||| || | |||||||||||| |||||||| ||||| |||||||||||||| |||||||||||| |||| |
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|
| T |
337553 |
agcgacaagataaaataaccatgtaagcgcggaagttatggtatctctccccgctacaaagagattgaatgcagcatc |
337476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 333
Target Start/End: Complemental strand, 333326 - 333222
Alignment:
| Q |
229 |
aatcttagcctccactaaagggtgtgtagcaatgagatagaagagccatgtaagcgctgaagttatagtatccctccccgctacaaaaagattgaatgca |
328 |
Q |
| |
|
|||||| || ||||| ||||| |||||||| | ||||| || | ||||||||| || |||||||| ||||| |||||||||||||| |||||||||||| |
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| T |
333326 |
aatcttggcttccaccaaaggatgtgtagcgacaagataaaataaccatgtaagggcggaagttatggtatctctccccgctacaaagagattgaatgca |
333227 |
T |
|
| Q |
329 |
acatc |
333 |
Q |
| |
|
|||| |
|
|
| T |
333226 |
gcatc |
333222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 12963873 - 12963809
Alignment:
| Q |
95 |
tcaaagggtattggaggaaaaagccttagagcttcacatatagcaccatgaagataaactagctt |
159 |
Q |
| |
|
||||| ||||| |||||| ||||||||| ||||||||| ||||| |||||||||||||| ||||| |
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|
| T |
12963873 |
tcaaatggtataggaggataaagccttaaagcttcacaaatagctccatgaagataaacaagctt |
12963809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 19279147 - 19279102
Alignment:
| Q |
114 |
aaagccttagagcttcacatatagcaccatgaagataaactagctt |
159 |
Q |
| |
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||||||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
19279147 |
aaagccttaaggcttcacatatagctccatgaagataaactagctt |
19279102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 3321431 - 3321385
Alignment:
| Q |
206 |
aaattttctttaatctcctcaagaatcttagcctccactaaagggtg |
252 |
Q |
| |
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||||||||||||||||| |||||||||||||| || || |||||||| |
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| T |
3321431 |
aaattttctttaatctcttcaagaatcttagcttcaacaaaagggtg |
3321385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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