View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4756-Insertion-9 (Length: 326)

Name: NF4756-Insertion-9
Description: NF4756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4756-Insertion-9
NF4756-Insertion-9
[»] chr5 (2 HSPs)
chr5 (8-326)||(6232440-6232761)
chr5 (121-285)||(6221699-6221863)


Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 326
Target Start/End: Complemental strand, 6232761 - 6232440
Alignment:
Q  8 atatgggctcttggttgcgccgtcgtggagatgattaccggagaacccgc---atggaatgagtcagatatgttaatgttgacgattcgaattggggttg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||| |||||||||||||||||||| ||||    
T  6232761 atatgggctcttggttgcgccgtcgtggagatgattaccggagaacccgccgcatggaatgaatcagatatgttgatgttgacgattcgaattggtgttg 6232662  T
Q  105 gagaagaattgccaaagattccagacgaattatcacaagaaggaaaagattttctagaaaagtgtttcattaaggatcctttgagaagatggacagcaga 204  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6232661 gagaagaattgccaaaaattccagaggaattatcacaagaaggaaaagattttttagaaaagtgtttcattaaggatcctttgagaagatggacagcaga 6232562  T
Q  205 tatgctcttcaaacatccgtttatctccgatgttgaaactgtttcagttgtaaatgagttagttgatgagttgccattgtcttcaccttctccaaaaact 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6232561 tatgctcttcaaacatccgtttatctccgatgttgaaactgtttcagttgtaaatgagttagttgatgagttgccattgtcttcaccttctccaaaaact 6232462  T
Q  305 tacttcaatatgctcattgtgt 326  Q
    ||||||||||||||||||||||    
T  6232461 tacttcaatatgctcattgtgt 6232440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 121 - 285
Target Start/End: Complemental strand, 6221863 - 6221699
Alignment:
Q  121 gattccagacgaattatcacaagaaggaaaagattttctagaaaagtgtttcattaaggatcctttgagaagatggacagcagatatgctcttcaaacat 220  Q
    ||||||||| |||||||||||||  |||||||||||||| |||||||||||||| ||||||||||  | ||||||||| ||||| ||||| || ||||||    
T  6221863 gattccagatgaattatcacaagtcggaaaagattttctcgaaaagtgtttcatcaaggatccttcaaaaagatggacggcagagatgcttttgaaacat 6221764  T
Q  221 ccgtttatctccgatgttgaaactgtttcagttgtaaatgagttagttgatgagttgccattgtc 285  Q
      ||||||||| | || ||||||||||||| | || || |||||  |  ||||||||||||||||    
T  6221763 gagtttatctcaggtgatgaaactgtttcattggtgaaagagttgatcaatgagttgccattgtc 6221699  T

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