View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4756_high_5 (Length: 408)
Name: NF4756_high_5
Description: NF4756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4756_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Original strand, 36002517 - 36002894
Alignment:
| Q |
19 |
ttgattgtttactttgagttttggttagtccccaaatattcgtattttctcctttttattttggaaaatttctcttatcacccactttctgttgatctta |
118 |
Q |
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| T |
36002517 |
ttgattgtttactttgagttttggttagtcccccaatatttgtattttctcctttttattttggaaaatttctcttatcacccactttctgttgatctta |
36002616 |
T |
|
| Q |
119 |
ctgagcattattgtagagtttgataaacttattataattatcacatatactacttatctatagctaataaaagtcctaacttagtttaaactttatatgc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36002617 |
ctgagcattattgtagagtttgataaacttattataattatcacatatactacttatctatagctaataaaagttctaacttagtttaaactttatatgc |
36002716 |
T |
|
| Q |
219 |
tttctagcagttacattgcgtcaaacagtggataccaaatttcctagctttatattgtctaaagctaaattaagaagataatatttctctctttgaagca |
318 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36002717 |
tttctagcagttacattacgtcaaacagtggataccaaatttcctagctttatattgtctaaagctaaattaagaagataatatttctctctttgaagca |
36002816 |
T |
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| Q |
319 |
tgaaaatatttatgatttcaaggcttatgatgttgtgtatagatgtagtctaggtgagcttctaaagtcattcatctc |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36002817 |
tgaaaatatttatgatttcaaggcttatgatgttgtgtatagatgtagtctaggtgagcttctaaagtcattcttctc |
36002894 |
T |
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