View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4756_low_1 (Length: 772)
Name: NF4756_low_1
Description: NF4756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4756_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 28 - 494
Target Start/End: Original strand, 11329512 - 11329978
Alignment:
| Q |
28 |
gctgatctctgtaagtaagaactacaaaaccacctcccacaactttgtcaaggccattaagaactttccccctcgccaggttatgagtcttatcctcgtc |
127 |
Q |
| |
|
||||||||||| ||| ||||||||| |||| || | |||||||||||||| ||| || ||||||| || ||||||| ||| |||||||||||||| |
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| T |
11329512 |
gctgatctctgatagtcagaactacagtaccaactttcgcaactttgtcaaggtcatgaacaactttcagccctgccaggtgatgggtcttatcctcgtc |
11329611 |
T |
|
| Q |
128 |
gtcacttccctctactgcaatgttgtcttgctcctcataaatctttgaaagatgcaatactctttccttttcaaacttacaactcttgttagcccgtgat |
227 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
11329612 |
gtcacttccctctactgcgatgttgtcttgctcctcaaaaatctttgagagctgcaatactctttccttttcaaacttacgactcttgttagcccatgat |
11329711 |
T |
|
| Q |
228 |
gagatctcggaagtagcttcaaattgtttcgttgtccttgtttctttcatcttcaagctatgttcttttgatgacaagtatgctgatgtttcaccatctt |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11329712 |
gagatctcggaagtagcttcaaattgtttcgttgtccttgtttctttcatcttcaagctatgttcttttgatgacaagtatgctgatgtttcaccatctt |
11329811 |
T |
|
| Q |
328 |
catcatcttgattgggttttgaagccttagcatgcttgccaacatcagcatctctcttttcatggtagtttaatttatcatcaagattagacaattcaaa |
427 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11329812 |
catcatcttgattgagtattgaagccttagcatgcttgccaacatcatcatctctcttttcatggtagtttaatttatcatcaagattagacaattcaaa |
11329911 |
T |
|
| Q |
428 |
atcttcctcacgagcctttcgttttcctctatccattgacctatccttctcatgctcatccctatta |
494 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11329912 |
atcttcctcacgagcctttcgttttcctctatccattgacctatccttctcatgctcatccctatta |
11329978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 28 - 494
Target Start/End: Original strand, 11487533 - 11487999
Alignment:
| Q |
28 |
gctgatctctgtaagtaagaactacaaaaccacctcccacaactttgtcaaggccattaagaactttccccctcgccaggttatgagtcttatcctcgtc |
127 |
Q |
| |
|
||||||||||| ||| ||||||||| |||| || | |||||||||||||| ||| || ||||||| || ||||||| ||| |||||||||||||| |
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|
| T |
11487533 |
gctgatctctgatagtcagaactacagtaccaactttcgcaactttgtcaaggtcatgaacaactttcagccctgccaggtgatgggtcttatcctcgtc |
11487632 |
T |
|
| Q |
128 |
gtcacttccctctactgcaatgttgtcttgctcctcataaatctttgaaagatgcaatactctttccttttcaaacttacaactcttgttagcccgtgat |
227 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
11487633 |
gtcacttccctctactgcgatgttgtcttgctcctcaaaaatctttgagagctgcaatactctttccttttcaaacttacgactcttgttagcccatgat |
11487732 |
T |
|
| Q |
228 |
gagatctcggaagtagcttcaaattgtttcgttgtccttgtttctttcatcttcaagctatgttcttttgatgacaagtatgctgatgtttcaccatctt |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11487733 |
gagatctcggaagtagcttcaaattgtttcgttgtccttgtttctttcatcttcaagctatgttcttttgatgacaagtatgctgatgtttcaccatctt |
11487832 |
T |
|
| Q |
328 |
catcatcttgattgggttttgaagccttagcatgcttgccaacatcagcatctctcttttcatggtagtttaatttatcatcaagattagacaattcaaa |
427 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11487833 |
catcatcttgattgagtattgaagccttagcatgcttgccaacatcatcatctctcttttcatggtagtttaatttatcatcaagattagacaattcaaa |
11487932 |
T |
|
| Q |
428 |
atcttcctcacgagcctttcgttttcctctatccattgacctatccttctcatgctcatccctatta |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11487933 |
atcttcctcacgagcctttcgttttcctctatccattgacctatccttctcatgctcatccctatta |
11487999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 561 - 772
Target Start/End: Original strand, 11330045 - 11330253
Alignment:
| Q |
561 |
tcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctctctatcataatctttcccccttgaattac |
660 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
11330045 |
tcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctctctatcataatctttctcccttgaattac |
11330144 |
T |
|
| Q |
661 |
cataattaaacctatttttctctcgctcaaccctattacgttgttctcttctggaacctctatccttttctgtatccccagaagccctcttgggatgatc |
760 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
11330145 |
cataattaaacctatttttctctcgctcaaccctactac---gttctcttctggaacctctatccttttttgtatccccagaagccctcttgggatgatc |
11330241 |
T |
|
| Q |
761 |
cctgtctcttct |
772 |
Q |
| |
|
|||||||||||| |
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|
| T |
11330242 |
cctgtctcttct |
11330253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 561 - 772
Target Start/End: Original strand, 11488066 - 11488274
Alignment:
| Q |
561 |
tcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctctctatcataatctttcccccttgaattac |
660 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11488066 |
tcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctctctatcataatctttctcccttgaattac |
11488165 |
T |
|
| Q |
661 |
cataattaaacctatttttctctcgctcaaccctattacgttgttctcttctggaacctctatccttttctgtatccccagaagccctcttgggatgatc |
760 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
11488166 |
cataattaaacctatttttctctcgctcaaccctactac---gttctcttctggaacctctatccttttttgtatccccagaagccctcttgggatgatc |
11488262 |
T |
|
| Q |
761 |
cctgtctcttct |
772 |
Q |
| |
|
|||||||||||| |
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|
| T |
11488263 |
cctgtctcttct |
11488274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 289 - 478
Target Start/End: Original strand, 37380799 - 37380988
Alignment:
| Q |
289 |
gttcttttgatgacaagtatgctgatgtttcaccatcttcatcatcttgattgggttttgaagccttagcatgcttgccaacatcagcatctctcttttc |
388 |
Q |
| |
|
|||||||||||||||||| |||||| || || || |||| ||||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||||| |
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|
| T |
37380799 |
gttcttttgatgacaagtttgctgaagtctccccctctttatcatcttgattgagttttgaagccttttcatgcttaccaacatcctcatctctcttttc |
37380898 |
T |
|
| Q |
389 |
atggtagtttaatttatcatcaagattagacaattcaaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctc |
478 |
Q |
| |
|
|||||| | || | |||||||||||||| ||||| |||||||||| ||||||| | ||||||||||| | |||||||| ||||| |
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|
| T |
37380899 |
atggtaatctactctatcatcaagattacctgattcataatcttcctcgtgagccttcctacttcctctatccctcgacctatctttctc |
37380988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 37376594 - 37376674
Alignment:
| Q |
28 |
gctgatctctgtaagtaagaactacaaaaccacctcccacaactttgtcaaggccattaagaactttccccctcgccaggt |
108 |
Q |
| |
|
||||||||||| ||| ||||||||| ||||||| || |||||||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
37376594 |
gctgatctctgatagtcagaactacagtaccaccttccgcaactttgtcaaggccatgaagaactttgacccccgccaggt |
37376674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 37377569 - 37377620
Alignment:
| Q |
156 |
tgctcctcataaatctttgaaagatgcaatactctttccttttcaaacttac |
207 |
Q |
| |
|
||||||||| ||||||| || || |||||||||||||||||||||| ||||| |
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|
| T |
37377569 |
tgctcctcaaaaatcttcgagagctgcaatactctttccttttcaagcttac |
37377620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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