View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4756_low_11 (Length: 251)
Name: NF4756_low_11
Description: NF4756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4756_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 26 - 243
Target Start/End: Original strand, 1940095 - 1940312
Alignment:
| Q |
26 |
tatatgataatagggatggaagtgtgatatatggaagcaatcaagaagttttgaacaaagtgaggactttcaaagatggtaaaatcaaaatatcaaagga |
125 |
Q |
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| T |
1940095 |
tatatgataatagggatggaagtgtgatatatggaagcaatcaagaagttttggacaaagtgaggactttcaaagatggtaaaatcaaaatatcaaagga |
1940194 |
T |
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| Q |
126 |
aggtgaacttcttcataatgaaaatggaacagcaatttcaggtgatgttcgcaatagttgggctggtgtctcaactttgcaggctctttttattcaagaa |
225 |
Q |
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| T |
1940195 |
aggtgaacttcttcataatgaagatggaacagcaatttcaggtgacattcgtaatagttgggctggtgtcacaactttgcagaccctttttgttctagaa |
1940294 |
T |
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| Q |
226 |
cacaatgctgtctgtgat |
243 |
Q |
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| T |
1940295 |
cacaatgctgtgtgtgat |
1940312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 1954535 - 1954773
Alignment:
| Q |
1 |
tacacatgagatgcatgaaactatatatatgataatagggatggaagtgtgatatatggaagcaatcaagaagttttgaacaaagtgaggactttcaaag |
100 |
Q |
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| T |
1954535 |
tacacatgacatgcatgaaactata----tgataatagggatggaagtgtgatatatggaagcaatcaagaagttttgaacaaagtgagaactttcaaag |
1954630 |
T |
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| Q |
101 |
atggtaaaatcaaaatatcaaaggaaggtgaacttcttcataatgaaaatggaacagcaatttcaggtgatgttcgcaatagttgggctggtgtctcaac |
200 |
Q |
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| T |
1954631 |
atgggaagttaaaaatattagacgatggtacccttaagcaaaatgaaaatggagtagcaatttcaggtgacgttcgcaatagttgggctggtgtctcaac |
1954730 |
T |
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| Q |
201 |
tttgcaggctctttttattcaagaacacaatgctgtctgtgat |
243 |
Q |
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| T |
1954731 |
tttgcaggctctctttattcaagaacacaatgctttttgtgat |
1954773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 37 - 243
Target Start/End: Original strand, 1925776 - 1925985
Alignment:
| Q |
37 |
agggatggaagtgtgatatatggaagcaatcaagaagttttgaacaaagtgaggactttcaaagatggtaaaatcaaaatatcaaaggaagg---tgaac |
133 |
Q |
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| T |
1925776 |
agggatggaagtgtgatatatggaagcaatgatgaaattttgacccaagtgaggacttcccaagatgggaagttaaaaatatcaaaggaaggaaatcatc |
1925875 |
T |
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| Q |
134 |
ttcttcataatgaaaatggaacagcaatttcaggtgatgttcgcaatagttgggctggtgtctcaactttgcaggctctttttattcaagaacacaatgc |
233 |
Q |
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| T |
1925876 |
ttctacaaaacgaagatggagttgcaatttcaggtgatgttcgcaatagttgggctggtgtttcaactttgcaagcccttttcattcaagaacacaatgc |
1925975 |
T |
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| Q |
234 |
tgtctgtgat |
243 |
Q |
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||| |||||| |
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| T |
1925976 |
tgtttgtgat |
1925985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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