View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4756_low_12 (Length: 245)
Name: NF4756_low_12
Description: NF4756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4756_low_12 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 27520294 - 27520521
Alignment:
| Q |
19 |
ccatgtcccacattgtttcactccttaacaccattacaaaaaatcaatttaattttcaaggttaaaagaacaaacataccattggccacagttatttaga |
118 |
Q |
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| T |
27520294 |
ccatgtcccacattgttgcactccttaacaccattacaaaaaatcaatttaattttcaaggttaaaagaacaaacataccattggccacagttatttaga |
27520393 |
T |
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| Q |
119 |
gaaacctcgtac-aaaaaagttggtatggttggcttgtatatagtaatatataacagctagagggtgcatgcttgatcatacccataatttgtgataggt |
217 |
Q |
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| T |
27520394 |
gaaacctcgtacaaaaaaagttggtatggttggctagtatatagtaatatataacagctagagggtgcatgcttgatcatacccataatttgtgataggt |
27520493 |
T |
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| Q |
218 |
ttatgtacatgatcttggccttccattt |
245 |
Q |
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| T |
27520494 |
ttatgtacatgatcttggccttccattt |
27520521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 113 - 241
Target Start/End: Original strand, 27499235 - 27499366
Alignment:
| Q |
113 |
tttagagaaacctcgtacaaaaaagttggtat---ggttggcttgtatatagtaatatataacagctagagggtgcatgcttgatcatacccataatttg |
209 |
Q |
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| T |
27499235 |
tttaaagaaacctcgtacaaaaaagttcgtatattggttggctagtaaatagtaatatagaacagctagagggtgcatgcatgatcatacccataatttg |
27499334 |
T |
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| Q |
210 |
tgataggtttatgtacatgatcttggccttcc |
241 |
Q |
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| T |
27499335 |
tgataggtttatgtacatgatcttgtccttcc |
27499366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 27498859 - 27498942
Alignment:
| Q |
19 |
ccatgtcccacattgtttcactccttaacaccattacaaaaaa-------tcaatttaattttcaaggttaaaagaacaaacata |
96 |
Q |
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| T |
27498859 |
ccatgtcccacattgtttcacttc-taacaccattacaaaaaaccaatatttaattcaattttcaaggttaaaagaacaaacata |
27498942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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