View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4756_low_13 (Length: 239)
Name: NF4756_low_13
Description: NF4756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4756_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 11329351 - 11329128
Alignment:
| Q |
1 |
aatacttccaaaatatgatgatctggctgctgaagagggtttaactttgaatgaaagaggaagattctcaagcgaagctgaaaagaaacttgaagagctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11329351 |
aatacttccaaaatatgatgatctggctgctgaagagggtttaactttgaatgaaagaggaagattctcaagcgaagctgaaaagaaacttgaagagctt |
11329252 |
T |
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| Q |
101 |
caaagaaggttaactggtgtttccactaataactttgaagaccttacttcatctagaaaggtatcatcagattactattctaatgaagaaatgcttcaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11329251 |
aaaagaaggttaactggtgtttccactaataactttgaagaccttacttcatctagaaaggtatcatcagattactattctaatgaagaaatgcttcaat |
11329152 |
T |
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| Q |
201 |
ttaagaagcccaagaagaaaaagt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
11329151 |
ttaagaagcccaagaagaaaaagt |
11329128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 11487372 - 11487149
Alignment:
| Q |
1 |
aatacttccaaaatatgatgatctggctgctgaagagggtttaactttgaatgaaagaggaagattctcaagcgaagctgaaaagaaacttgaagagctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11487372 |
aatacttccaaaatatgatgatctggctgctgaagagggtttaactttgaatgaaagaggaagattctcaagcgaagctgaaaagaaacttgaagagctt |
11487273 |
T |
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| Q |
101 |
caaagaaggttaactggtgtttccactaataactttgaagaccttacttcatctagaaaggtatcatcagattactattctaatgaagaaatgcttcaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11487272 |
aaaagaaggttaactggtgtttccactaataactttgaagaccttacttcatctagaaaggtatcatcagattactattctaatgaagaaatgcttcaat |
11487173 |
T |
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| Q |
201 |
ttaagaagcccaagaagaaaaagt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
11487172 |
ttaagaagcccaagaagaaaaagt |
11487149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 37375612 - 37375492
Alignment:
| Q |
104 |
agaaggttaactggtgtttccactaataactttgaagaccttacttcatctagaaaggtatcatcagattactattctaatgaagaaatgcttcaattta |
203 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | ||||||||||||||||||| |
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| T |
37375612 |
agaaggttaactggtggttccactaataactttgaagaccttacttcatctggaaaggtatcctcagattactattctcacgaagaaatgcttcaattta |
37375513 |
T |
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| Q |
204 |
agaagcccaagaagaaaaagt |
224 |
Q |
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||||||||||||||||||||| |
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| T |
37375512 |
agaagcccaagaagaaaaagt |
37375492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 37376108 - 37376047
Alignment:
| Q |
36 |
agggtttaactttgaatgaaagaggaagattctcaagcgaagctgaaaagaaacttgaagag |
97 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
37376108 |
agggtttaactttggatgaaagaggaagattctcaggcgaagctgaaaagagacttgaagag |
37376047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37376241 - 37376204
Alignment:
| Q |
1 |
aatacttccaaaatatgatgatctggctgctgaagagg |
38 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
37376241 |
aatacttccaaaatatgatgatccggctgctgaagagg |
37376204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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