View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4756_low_14 (Length: 238)
Name: NF4756_low_14
Description: NF4756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4756_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 55 - 209
Target Start/End: Complemental strand, 1953880 - 1953726
Alignment:
| Q |
55 |
tatggaaaatattcttaccaccaaggtgtacgaatgtttgcatgtccagtcttgatctcatagaaacccgttggaatttcctttgtcttcaagaacttga |
154 |
Q |
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| T |
1953880 |
tatggaaaatattcttaccaccaaggtgtacgaatgtttgcatgtccagtcttgatctcataaaaacccgttggaatttcctttgtcttcaagaacttga |
1953781 |
T |
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| Q |
155 |
atgattttagtggacattggtttgcaacttcacgtggtgcagtgagttcaatcta |
209 |
Q |
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| T |
1953780 |
atgattttagtggacattggcttgcaacttcacgtggtgcagtgagttcaatcta |
1953726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 1939998 - 1939855
Alignment:
| Q |
65 |
attcttaccaccaaggtgtacgaatgtttgcatgtccagtcttgatctcatagaaacccgttggaatttcctttgtcttcaagaacttgaatgattttag |
164 |
Q |
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| T |
1939998 |
attcttaccaccaaggtgtacggatgtttgcatgtccggtctggacctcatagaagccagttgggatttcctttgtcttgaagaacttgaaagatttaag |
1939899 |
T |
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| Q |
165 |
tggacattggtttgcaacttcacgtggtgcagtgagttcaatct |
208 |
Q |
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| T |
1939898 |
tgggcattggtttacaacttctcttggtgcaatgagttcaatct |
1939855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 70 - 209
Target Start/End: Complemental strand, 1924572 - 1924433
Alignment:
| Q |
70 |
taccaccaaggtgtacgaatgtttgcatgtccagtcttgatctcatagaaacccgttggaatttcctttgtcttcaagaacttgaatgattttagtggac |
169 |
Q |
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| T |
1924572 |
taccaccaaggtgtgcgtatgtttggatgtccagtcttgatatcatcgaacccagtgggcatttcctttgtcttcaaaaacttgaaagattttagtgggc |
1924473 |
T |
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| Q |
170 |
attggtttgcaacttcacgtggtgcagtgagttcaatcta |
209 |
Q |
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| T |
1924472 |
attgacttgcaacttcttgtggggcagtcagttctatcta |
1924433 |
T |
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