View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4756_low_15 (Length: 204)
Name: NF4756_low_15
Description: NF4756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4756_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 8394994 - 8394828
Alignment:
| Q |
17 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgaga |
116 |
Q |
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| T |
8394994 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgaga |
8394895 |
T |
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| Q |
117 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgat |
183 |
Q |
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| T |
8394894 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgat |
8394828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 8406335 - 8406501
Alignment:
| Q |
17 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgaga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8406335 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgaga |
8406434 |
T |
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| Q |
117 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgat |
183 |
Q |
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| T |
8406435 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgat |
8406501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 8412455 - 8412621
Alignment:
| Q |
17 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgaga |
116 |
Q |
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| T |
8412455 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgaga |
8412554 |
T |
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| Q |
117 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgat |
183 |
Q |
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| T |
8412555 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgat |
8412621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 8434553 - 8434719
Alignment:
| Q |
17 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgaga |
116 |
Q |
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| T |
8434553 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgaga |
8434652 |
T |
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| Q |
117 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgat |
183 |
Q |
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| T |
8434653 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgat |
8434719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 8395237 - 8395071
Alignment:
| Q |
17 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgaga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
8395237 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaactccagacatggttgtagcagtgaga |
8395138 |
T |
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| Q |
117 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgat |
183 |
Q |
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| T |
8395137 |
gtaatcatttttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgat |
8395071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 30 - 183
Target Start/End: Original strand, 8431496 - 8431646
Alignment:
| Q |
30 |
agagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatattta |
129 |
Q |
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|||||||| || ||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| |||| |
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| T |
8431496 |
agagcagaagatagtttcagagccaaaagtggtgcaacttccccacttgtgacagctgcaacaccagacatagtcttagcagtgagagtaatcatgttta |
8431595 |
T |
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| Q |
130 |
ttgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgat |
183 |
Q |
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| T |
8431596 |
ttgagttcaaaagaagattattccagttgttac---gttcgccaatgttgtgat |
8431646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 8375475 - 8375379
Alignment:
| Q |
87 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgat |
183 |
Q |
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|||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| |||||||| |||||||||||||| |||| |
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| T |
8375475 |
gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgttacgctgttcgccaatgttttgat |
8375379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 8439628 - 8439724
Alignment:
| Q |
87 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgat |
183 |
Q |
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|||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| ||| |||| |||||||||||||| |||| |
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| T |
8439628 |
gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgctacgctgttcgccaatgttttgat |
8439724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 8417746 - 8417842
Alignment:
| Q |
87 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgat |
183 |
Q |
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|||| ||||||||||||||||||||||||||||||||| || || || || || |||||| | ||||| ||||||||| |||| | ||||||||||| |
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| T |
8417746 |
gcaagaccagacatggttgtagcagtgagagtaatcatgttgatggaattcaagagaagagtgttccaattgttacgtagttcacaaatgttgtgat |
8417842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 8368812 - 8368884
Alignment:
| Q |
111 |
gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgat |
183 |
Q |
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| T |
8368812 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgat |
8368884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 8400598 - 8400526
Alignment:
| Q |
111 |
gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgat |
183 |
Q |
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|||||||| ||||| || || |||||||||||||| ||||||| || | ||||||||||||||||| |||| |
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| T |
8400598 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgat |
8400526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 8422175 - 8422103
Alignment:
| Q |
111 |
gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgat |
183 |
Q |
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|||||||| ||||| || || |||||||||||||| ||||||| || | ||||||||||||||||| |||| |
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| T |
8422175 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgat |
8422103 |
T |
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Back To:
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