View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4756_low_2 (Length: 747)
Name: NF4756_low_2
Description: NF4756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4756_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 345 - 731
Target Start/End: Complemental strand, 8134789 - 8134391
Alignment:
| Q |
345 |
gtgtcatgtcgcacaccaaacatgtcttcaatctaaagttttaaagctacataggacatgccgacacgtacatgagaaagaacattgacacatcgcatat |
444 |
Q |
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| T |
8134789 |
gtgtcatgtcgcacaccaaacatgtcatcaatctaaagtttcaaagctacataggacatgccgacacgtacatgagaaagaatattgacacatcgcatat |
8134690 |
T |
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| Q |
445 |
acgcagataataatttgagnnnnnnngttattgaatgaaactacatgcatagatgttgtgttagtatccaacactagcatgtctcggacaccagacatat |
544 |
Q |
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| T |
8134689 |
acatcgataataatttgagaaaaaaagttattgaatgaaactacatgcgtggatgttgtgttagtatccaacactagcatgtctcggacaccagacatat |
8134590 |
T |
|
| Q |
545 |
attcaatcagaaatctcggtactaaatatggtcaacaaacaagctacaggtgtgtgacttaacatgatttgcaccatcgcaggttgctacatgaacttgg |
644 |
Q |
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| T |
8134589 |
attcaatcagaaatctcggtaataaatatggtcaacaaacaagctacaggtgtgtgacttaacatgatttgcaccatcgcaggttgctacatgaacttgg |
8134490 |
T |
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| Q |
645 |
acggttacaaccacaagacaaagatgcgg------------aaacacacttatgataaaattacgaggtttaatagcagcctaattaagccttaacatc |
731 |
Q |
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| T |
8134489 |
acggttacaaccacgagacaaagatgcggcaatcaagcggataacacacttatgatacaattacgaggtttaacagcagcctaattaagccttaacatc |
8134391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 8135128 - 8134852
Alignment:
| Q |
11 |
cataggacacgtcgacacatatatcagacacaacattgataaatacgtatatacacttctaataatttaagnnnnnnnn-----gcgattgaatgtacat |
105 |
Q |
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| T |
8135128 |
cataggacacgtcgacacgtatatcagacacaacattgatacatacgcatatacacttctaataatttaagagaaaaaaaaaaagcgattgaatgtacat |
8135029 |
T |
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| Q |
106 |
gtgtgggtgatgtgttagtgtccaacattagcatgcctcggacaccaaacacattttcaatcttaaatttcagtgcaacatataatcaaacactatttct |
205 |
Q |
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| T |
8135028 |
gtgtgggtgatgtgttagtgtccaacattagcatgccttggacgccaaacacattttcaatctgaaatttcagtgcaacatataatcaaacactatttct |
8134929 |
T |
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| Q |
206 |
aatcgatcaatgatatcaaacaccacacatgatattgacataaacaaacattgtatacaacactgacgtatcgacac |
282 |
Q |
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| T |
8134928 |
aatcaatcaatgatatcaaacaccacacatgatattgacataaacaaacattgtatacaacactgacgtatcgacac |
8134852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 335 - 446
Target Start/End: Complemental strand, 8135187 - 8135075
Alignment:
| Q |
335 |
acatgttttggtgtcatgtcgcacaccaaacatgtcttcaatctaaagttttaaagctacataggacatgccgacacgtacatgagaaagaacattgaca |
434 |
Q |
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| T |
8135187 |
acatgttttggtgtcatatcggatgctagacacgtcttcaatctaaagtttcggagctacataggacacgtcgacacgtatatcagacacaacattgata |
8135088 |
T |
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| Q |
435 |
cat-cgcatatac |
446 |
Q |
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| T |
8135087 |
catacgcatatac |
8135075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 8134648 - 8134582
Alignment:
| Q |
101 |
tacatgtgtgggtgatgtgttagtgtccaacattagcatgcctcggacaccaaacacattttcaatc |
167 |
Q |
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| T |
8134648 |
tacatgcgtggatgttgtgttagtatccaacactagcatgtctcggacaccagacatatattcaatc |
8134582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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