View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4756_low_3 (Length: 438)

Name: NF4756_low_3
Description: NF4756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4756_low_3
NF4756_low_3
[»] chr6 (8 HSPs)
chr6 (21-193)||(14363613-14363785)
chr6 (34-193)||(14319135-14319294)
chr6 (245-304)||(14319025-14319084)
chr6 (245-304)||(14363503-14363562)
chr6 (364-407)||(14318932-14318975)
chr6 (364-407)||(14363409-14363452)
chr6 (100-175)||(14294815-14294890)
chr6 (247-295)||(14294695-14294743)
[»] scaffold1322 (2 HSPs)
scaffold1322 (245-304)||(1996-2055)
scaffold1322 (364-407)||(1902-1945)


Alignment Details
Target: chr6 (Bit Score: 141; Significance: 9e-74; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 14363785 - 14363613
Alignment:
Q  21 tcatctctcaaaactctcaaacctcgatccacagttcaactccacaactatatataaatctatcaagtataatccttaataatccagaatcaatcaatgg 120  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14363785 tcatctctcaaaactctcaaacctcgatccacaattcaactccgcaactatatataaatccatcaagtataatccttaataatccagaatcaatcaatgg 14363686  T
Q  121 cattatgtagaggaacattggtcagagtcatcgttctacgtgacagtgggtacgtatgtaaccttcacttagg 193  Q
    ||||| | |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  14363685 cattacgcagaggaacattggtcagagtcatcattctaggtgacagtgggtatgtatgtaaccttcacttagg 14363613  T

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Target: chr6; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 34 - 193
Target Start/End: Complemental strand, 14319294 - 14319135
Alignment:
Q  34 ctctcaaacctcgatccacagttcaactccacaactatatataaatctatcaagtataatccttaataatccagaatcaatcaatggcattatgtagagg 133  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  14319294 ctctcaaacctcgatccacaattcaactccgcaactatatataaatccatcaagtataatccttaataatccagaatcaatcaatggcattacgcagagg 14319195  T
Q  134 aacattggtcagagtcatcgttctacgtgacagtgggtacgtatgtaaccttcacttagg 193  Q
    ||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  14319194 aacattggtcagagtcatcattctaggtgacagtgggtatgtatgtaaccttcacttagg 14319135  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 14319084 - 14319025
Alignment:
Q  245 tggggtcggaaaaacttcattgatgaatcagtatcctttgcaatttctcatatcgtacct 304  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  14319084 tggggtcggaaaaacttcattgatgagtcagtatcctttgcaatttctcatttcgtacct 14319025  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 14363562 - 14363503
Alignment:
Q  245 tggggtcggaaaaacttcattgatgaatcagtatcctttgcaatttctcatatcgtacct 304  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  14363562 tggggtcggaaaaacttcattgatgagtcagtatcctttgcaatttctcatttcgtacct 14363503  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 14318975 - 14318932
Alignment:
Q  364 gcttaatttgcaagattttggtataagtactttttatttaaatt 407  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||    
T  14318975 gcttaatttgcaagattttggtatacgtagtttttatttaaatt 14318932  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 14363452 - 14363409
Alignment:
Q  364 gcttaatttgcaagattttggtataagtactttttatttaaatt 407  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||    
T  14363452 gcttaatttgcaagattttggtatacgtagtttttatttaaatt 14363409  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 14294890 - 14294815
Alignment:
Q  100 taatccagaatcaatcaatggcattatgtagaggaacattggtcagagtcatcgttctacgtgacagtgggtacgt 175  Q
    ||||||| | |||||| |||||| |||| ||| |||||||| ||| ||| ||||||||| | ||||||||||||||    
T  14294890 taatccaaagtcaatcgatggcactatgcagaagaacattgctcaaagttatcgttctaggagacagtgggtacgt 14294815  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 14294743 - 14294695
Alignment:
Q  247 gggtcggaaaaacttcattgatgaatcagtatcctttgcaatttctcat 295  Q
    |||| |||||||| || ||||||||||||||||||||  ||||||||||    
T  14294743 gggttggaaaaacatctttgatgaatcagtatcctttaaaatttctcat 14294695  T

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Target: scaffold1322 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 2055 - 1996
Alignment:
Q  245 tggggtcggaaaaacttcattgatgaatcagtatcctttgcaatttctcatatcgtacct 304  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  2055 tggggtcggaaaaacttcattgatgagtcagtatcctttgcaatttctcatttcgtacct 1996  T

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Target: scaffold1322; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 1945 - 1902
Alignment:
Q  364 gcttaatttgcaagattttggtataagtactttttatttaaatt 407  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||    
T  1945 gcttaatttgcaagattttggtatacgtagtttttatttaaatt 1902  T

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