View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4756_low_4 (Length: 422)
Name: NF4756_low_4
Description: NF4756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4756_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 33583019 - 33582633
Alignment:
| Q |
19 |
ttatgatccgtagtttagacaggaagtaagtaaagtttagttaatgattgtttcaatcaggattcgtactta--acttctaattgacttgacctttcctg |
116 |
Q |
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| T |
33583019 |
ttatgattcgtagttcagacaggaggtaagtaaaatttagtcaataattatttcaaccaggatttgtacttggtacttccaattgacttgacctttcccg |
33582920 |
T |
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| Q |
117 |
aacctcatcattaatcactcgaattaaaccatttaatttcagttagaatatattcaaatgctaagttaccgtattctttttcaaagtataaggaggcacc |
216 |
Q |
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| T |
33582919 |
aacctcatcattaatcactcaaattgaaccatttaatttcagttagaatatattcaaatgctaagttactgtattctttttcaaagtataaggaggcacg |
33582820 |
T |
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| Q |
217 |
gaagcaagaactgctatcagaagaatccagtgcgatcttcactcaagttaagagtggtcagtagattgatatagatagaaaattaaaatatagttgatca |
316 |
Q |
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| T |
33582819 |
gaagcaagaactgctatcagaagaatccagtgcgatcttcactcaagttaagagtggtcagtagattgatatagataaaaaattaaaatatagttgatca |
33582720 |
T |
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| Q |
317 |
tggaatatagcctatatttactcttatttatcatcttcttttagatgaaatctctggtaatgctacatatggaacttcagattctgtg |
404 |
Q |
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| T |
33582719 |
tgg-atatagcctatatttactcttatttatcatcttcttttagatgaaatctctggtaatgctacatatggaacttcagattctgtg |
33582633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 210 - 404
Target Start/End: Complemental strand, 33593842 - 33593649
Alignment:
| Q |
210 |
aggcaccgaagcaagaactgctatcagaagaatccagtgcgatcttcactcaagttaagagtggtcagtagattgatatagatagaaaattaaaatatag |
309 |
Q |
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| T |
33593842 |
aggcaccgaagcaagaactgctatcagaa-aatccagcgcgatcttcactcaagttaagagtggtcagtagattgatatagataaaaaattaaattatag |
33593744 |
T |
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| Q |
310 |
ttgatcatggaatatagcctatatttactcttatttatcatcttcttttagatgaaatctctggtaatgctacatatggaacttcagattctgtg |
404 |
Q |
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| T |
33593743 |
ttgatcatggaatatagcctatatttactcttatttatcatcttcttttagatgaaatctctggtaatgctacatatggaacttcagattctgtg |
33593649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 217 - 402
Target Start/End: Original strand, 37197456 - 37197639
Alignment:
| Q |
217 |
gaagcaagaactgctatcagaagaatccagtgcgatcttcactcaagttaagagtggtcagtagattgatatagatagaaaattaaaatatagttgatca |
316 |
Q |
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| T |
37197456 |
gaagcaagaatttctttcggaagaatccagcgcgatcttcggtcaagttaagaatggtaaatagat------agatagaaaattaaaatatagttgatca |
37197549 |
T |
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| Q |
317 |
tg---gaatatagcctatatttactcttatttatcatctt-cttttagatgaaatctctggtaatgctacatatggaacttcagattctg |
402 |
Q |
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| T |
37197550 |
tgatggacgatagactataggaacgcttatttatcatctttctttcagatgaagtctccggtaatgctacatatggaacttcagattctg |
37197639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 37230548 - 37230611
Alignment:
| Q |
143 |
aaccatttaatttcagttagaatatattcaaatgctaagttaccgtattctttttcaaagtata |
206 |
Q |
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| T |
37230548 |
aaccatttaatttcagttagagtatatttaaatgctaagttactctattatttttcaaagtata |
37230611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 33596225 - 33596090
Alignment:
| Q |
44 |
gtaagtaaagtttagttaatgattgtttcaatcaggattcgtactta--acttctaattgacttgacctttcctgaacctcatcattaatcactcgaatt |
141 |
Q |
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| T |
33596225 |
gtaagtaaaatctagtcaatgattgttacaaccagggttcgaacttggtacttgcaatcgacttgaccttcaccgaacctcat---taatcacttgaata |
33596129 |
T |
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| Q |
142 |
aaaccatttaatttcagttagaatatattcaaatgctaa |
180 |
Q |
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| T |
33596128 |
gaaccatttaatttcagttagagtatattcaaatgctaa |
33596090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 37237465 - 37237528
Alignment:
| Q |
143 |
aaccatttaatttcagttagaatatattcaaatgctaagttaccgtattctttttcaaagtata |
206 |
Q |
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|||| |||||||||||||||| |||||| |||||||||||||| |||| |||||||||||||| |
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| T |
37237465 |
aaccctttaatttcagttagagtatatttaaatgctaagttactctattatttttcaaagtata |
37237528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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