View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4756_low_6 (Length: 386)
Name: NF4756_low_6
Description: NF4756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4756_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 6 - 372
Target Start/End: Original strand, 28782240 - 28782611
Alignment:
| Q |
6 |
acaaatatatatttgtaggtgtagaac-----ttgtatgacaattattgttacgtaaaaatctctaatgttttatttttcaatcaataatgttataaacg |
100 |
Q |
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| T |
28782240 |
acaaatatatatttgtaggtgtagaaccatatttgtatgacaattattgttacgtaaaaatctctaatgttttatttttcaatcaataatgttataaacg |
28782339 |
T |
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| Q |
101 |
tactggaaaaaaggcttaggctttagatcaaagtgtgcagaatacaactttttggttgcaataattaacgatacaaatggatttattaaccacagaaagt |
200 |
Q |
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| T |
28782340 |
tactggcaaaaaggcttaggctttagatcaaagtgtgcagaatacaactttttggttgcaataattaacgatacaaatggatttattaaccacagaaagt |
28782439 |
T |
|
| Q |
201 |
gagaaaaactatcacaaataacacatttatatacacatgaaagtaacttttaaaaaatacttccagtgatcttcacacaagaacaacaaatgattacact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28782440 |
gagaaaaactatcacaaataacacatttatatacacatgaaagtaacttttaaaaaatacttccagtgatcttcacacaagaacaacaaatgattacact |
28782539 |
T |
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| Q |
301 |
cagattcatcaaacttcttcaaacatcatgctatttttgttttctccgttatcccttgatgctcttctgttc |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28782540 |
cagattcatcaaacttcttcaaacatcatgctatttttgttttctccattatcccttgatgctcttctgttc |
28782611 |
T |
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