View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4756_low_7 (Length: 368)
Name: NF4756_low_7
Description: NF4756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4756_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 350
Target Start/End: Original strand, 44714466 - 44714802
Alignment:
| Q |
14 |
ggagcagagaacactaacaaggtgtgagtgccatctctagatcccacattttttacatcaacgtgaagggcaattgagagtttgccacatcttgcatgtg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44714466 |
ggagcagagaacactaacaaggtgtgagtgccatctctagatcccacattttttacatcaacgtgaagggcaattgagagtttgccacatcttgcatgtg |
44714565 |
T |
|
| Q |
114 |
tcactctaattgctttgtttgaaatgtttgtgttgttgccatgtcggtgaccatggaccggaactgacaccaccgtgggtgcactagataattcgtgaac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44714566 |
tcactctaattgctttgtttgaaatgtttgtgttgttgccatgtcggtgaccatggactggaactgacaccactgtgggtgcactagataattcgtgaac |
44714665 |
T |
|
| Q |
214 |
aaaatgtgtgtatgttaatccatgtccaaatggatatacaactggtcccttgtagaatctatatgttcttcctgggtaccctattttgcttggtctcatt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44714666 |
aaaatgtgtgtatgttaatccatgtccaaatggatatacaactggtcccttgtagaatctatatgttcttcctgggtaccctattttgcttggtctcatt |
44714765 |
T |
|
| Q |
314 |
gccatatttgtcatggccaagttttttaggtactctt |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44714766 |
gccatatttgtcatggccaagttttttaggtactctt |
44714802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 345
Target Start/End: Complemental strand, 39091296 - 39090974
Alignment:
| Q |
20 |
gagaacactaacaaggtgtgagtgccatctctagatcccacattttttacatcaacgtgaagggcaattgagagtttgccacatcttgcatgtgtcactc |
119 |
Q |
| |
|
|||||||| ||||| |||| ||| |||||| | || || || ||||| ||||||| || ||| |||||| || |||||||||| |||||||||||||| |
|
|
| T |
39091296 |
gagaacaccaacaaagtgttagtaccatcttttgaaccaacgtttttaacatcaatgtcaagtctaattgaaagcttgccacatcgtgcatgtgtcactc |
39091197 |
T |
|
| Q |
120 |
taattgctttgtttgaaatgtttgtgttgttgccatgtcggtgaccatggaccggaactgacaccaccgtgggtgcactagataattcgtgaacaaaatg |
219 |
Q |
| |
|
|||||||| | || |||||| | |||| ||| | ||||| || | || |||||||||||||| | |||||||||| |||| ||||||||| | |
|
|
| T |
39091196 |
taattgct--gctt----tgtttgagctgtttccacggcggtgtccgtctactggaactgacaccacttttggtgcactagctaatgtgtgaacaaagtt |
39091103 |
T |
|
| Q |
220 |
tgtgtatgttaatccatgtccaaatggatatacaactggtcccttgtagaatctatatgttcttcctgggtaccctat---tttgcttggtctcattgcc |
316 |
Q |
| |
|
|||||| | |||||| | |||||||||||||| || || || ||||| || | ||| ||||| || ||||||||| | | |||||||||||||||| |
|
|
| T |
39091102 |
tgtgtaagataatccgtaaccaaatggatataccacagggccgttgtaaaaacgataggttctcccagggtaccctgtggatgagcttggtctcattgcc |
39091003 |
T |
|
| Q |
317 |
atatttgtcatggccaagttttttaggta |
345 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |
|
|
| T |
39091002 |
atatttgtcattgccaagtttttgaggta |
39090974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University