View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4756_low_9 (Length: 272)

Name: NF4756_low_9
Description: NF4756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4756_low_9
NF4756_low_9
[»] chr3 (8 HSPs)
chr3 (9-257)||(22621057-22621305)
chr3 (9-250)||(22657209-22657450)
chr3 (24-257)||(22648317-22648549)
chr3 (137-252)||(22615530-22615645)
chr3 (168-250)||(22034599-22034681)
chr3 (168-250)||(22028082-22028164)
chr3 (168-250)||(22187070-22187152)
chr3 (177-250)||(22208102-22208175)
[»] chr1 (4 HSPs)
chr1 (9-250)||(34980244-34980485)
chr1 (9-257)||(34975457-34975705)
chr1 (9-257)||(34989292-34989540)
chr1 (9-223)||(2305628-2305842)
[»] chr4 (1 HSPs)
chr4 (150-198)||(29610855-29610903)
[»] chr8 (1 HSPs)
chr8 (172-257)||(27294623-27294708)


Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 22621057 - 22621305
Alignment:
Q  9 acatcatcaaatacaaaaacatacctcttttgttgcaagtggtttctcaacttagaaatcaatgaccctagatccatttcagagatatcttgagaagggt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22621057 acatcatcaaatacaaaaacatacctcttttgttgcaagtggtttctcaacttagaaatcaatgaccctagatccatttcagagatatcttgagaagggt 22621156  T
Q  109 cgtctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22621157 cgtctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatatcgtatgattgtgacactgtgacccatacacgatattcgaagtg 22621256  T
Q  209 tcccatgacctctttgctgtcgaaaacctttttggcaagagtggatttt 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22621257 tcccatgacctctttgctgtcgaaaacctttttggcaagagtggatttt 22621305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 22657209 - 22657450
Alignment:
Q  9 acatcatcaaatacaaaaacatacctcttttgttgcaagtggtttctcaacttagaaatcaatgaccctagatccatttcagagatatcttgagaagggt 108  Q
    ||||||||||| |||||||||||||||||||  |||||||  ||||||| || |||||||||||  ||| |||||||||||| ||||||||||| ||| |    
T  22657209 acatcatcaaacacaaaaacatacctctttttctgcaagtattttctcagctcagaaatcaatgcgcctcgatccatttcagtgatatcttgaggaggat 22657308  T
Q  109 cgtctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtg 208  Q
     |||||||||||||| ||||| |||||||||||||  ||||| |||| | ||||||||||| |||||||||||||||| ||| |||||| |||| |||||    
T  22657309 tgtctcctttttgtttgtaaagctccttcaacatgcgtctcaacaacacttctatattgtaagattgtgacactgtgatccaaacacgacattcaaagtg 22657408  T
Q  209 tcccatgacctctttgctgtcgaaaacctttttggcaagagt 250  Q
    ||| |  |||||||||||||| ||||| ||||| ||||||||    
T  22657409 tccaacaacctctttgctgtcaaaaacttttttagcaagagt 22657450  T

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Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 22648317 - 22648549
Alignment:
Q  24 aaaacatacctcttttgttgcaagtggtttctcaacttagaaatcaatgaccctagatccatttcagagatatcttgagaagggtcgtctcctttttgtt 123  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| ||||||  ||||||||  |||||| ||| || ||| || |||||||||||||    
T  22648317 aaaacatacctcttttgttgcaagtagtttctcagctcagaaatcaacgaccctc-atccattttcgagatacctttaggaggctcttctcctttttgtt 22648415  T
Q  124 ggtaaatctccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctcttt 223  Q
     ||||| ||| |||||||||  |||||||||||| ||| ||| |||||||||  ||||| ||| |||||||||| |||| |||||||||   ||||||||    
T  22648416 tgtaaagctcattcaacatgcctctcagcaacccttctgtatagtatgattgcaacactttgatccatacacgaaattcaaagtgtcccgctacctcttt 22648515  T
Q  224 gctgtcgaaaacctttttggcaagagtggatttt 257  Q
    |||||| || || ||| |||||||||||| ||||    
T  22648516 gctgtcaaacacttttctggcaagagtggttttt 22648549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 252
Target Start/End: Original strand, 22615530 - 22615645
Alignment:
Q  137 caacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacc 236  Q
    ||||||||  |||| |||||| |||||| |||||||||| |||||||||| |||||||||| | || ||||||||    ||||| ||||| || |||||     
T  22615530 caacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaaca 22615629  T
Q  237 tttttggcaagagtgg 252  Q
    || |||||||||||||    
T  22615630 ttcttggcaagagtgg 22615645  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 22034681 - 22034599
Alignment:
Q  168 tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagt 250  Q
    |||||||| |||||||| | |||||||||||| || |||||||||||||  || |||||||| ||||| || ||||| |||||    
T  22034681 tatgattgagacactgtaatccatacacgataatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagt 22034599  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 22028164 - 22028082
Alignment:
Q  168 tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagt 250  Q
    |||||||| |||||||| | |||||||||| | || |||||||||||||  || |||||||| ||||| || ||||| |||||    
T  22028164 tatgattgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagt 22028082  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 22187152 - 22187070
Alignment:
Q  168 tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagt 250  Q
    |||||||| |||||||| | |||||||||| | || |||||||||||||  || |||||||| ||||| || ||||| |||||    
T  22187152 tatgattgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagt 22187070  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 22208175 - 22208102
Alignment:
Q  177 gacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagt 250  Q
    |||||||||| |||||||||| | || |||| ||| || |||||||||||||| ||||| |  |||||||||||    
T  22208175 gacactgtgatccatacacgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagt 22208102  T

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Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 34980485 - 34980244
Alignment:
Q  9 acatcatcaaatacaaaaacatacctcttttgttgcaagtggtttctcaacttagaaatcaatgaccctagatccatttcagagatatcttgagaagggt 108  Q
    ||||||||||| |||||||||||||||||||  |||||||  |||||||||| | |||||||||   || |||||||||||| |||||||| |  ||| |    
T  34980485 acatcatcaaacacaaaaacatacctctttttctgcaagtaatttctcaactcataaatcaatgcatctcgatccatttcagtgatatcttcaagaggat 34980386  T
Q  109 cgtctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtg 208  Q
      ||||||||||||| ||||| || ||||||||||  |||||||||  | || ||||||||||||||||||||||||| |||||||||| |||| |||||    
T  34980385 gttctcctttttgttcgtaaagcttcttcaacatgcgtctcagcaatacttcaatattgtatgattgtgacactgtgatccatacacgacattcaaagtg 34980286  T
Q  209 tcccatgacctctttgctgtcgaaaacctttttggcaagagt 250  Q
    |||||  ||||||||||| || ||||| ||||| ||||||||    
T  34980285 tcccacaacctctttgctatcaaaaacttttttagcaagagt 34980244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 257
Target Start/End: Complemental strand, 34975705 - 34975457
Alignment:
Q  9 acatcatcaaatacaaaaacatacctcttttgttgcaagtggtttctcaacttagaaatcaatgaccctagatccatttcagagatatcttgagaagggt 108  Q
    ||||||||||| |||||||||||||||||||  |||||||  |||||||||| |||||||||||  ||| |||||||||||| |||  ||| || ||| |    
T  34975705 acatcatcaaacacaaaaacatacctctttttctgcaagtactttctcaactcagaaatcaatgcacctcgatccatttcagtgattcctttaggaggtt 34975606  T
Q  109 cgtctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtg 208  Q
      ||||||||||||  ||||| || || |||||||| ||||  |||  | ||  | |||| ||||||||||||||||| |||||||||| |||| |||||    
T  34975605 tttctcctttttgtccgtaaagcttctccaacatgtgtctcgacaatacttcagtgttgtgtgattgtgacactgtgatccatacacgacattcaaagtg 34975506  T
Q  209 tcccatgacctctttgctgtcgaaaacctttttggcaagagtggatttt 257  Q
    |||||  ||||||||||| || ||||||||||| |||||||||| ||||    
T  34975505 tcccacaacctctttgctatcaaaaacctttttagcaagagtggttttt 34975457  T

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Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 257
Target Start/End: Complemental strand, 34989540 - 34989292
Alignment:
Q  9 acatcatcaaatacaaaaacatacctcttttgttgcaagtggtttctcaacttagaaatcaatgaccctagatccatttcagagatatcttgagaagggt 108  Q
    ||||||||||| |||||||||||||||||||  |||||||  |||||||||| |||||||||||  ||| |||||||||||| |||  ||| || ||| |    
T  34989540 acatcatcaaacacaaaaacatacctctttttctgcaagtactttctcaactcagaaatcaatgcacctcgatccatttcagtgattcctttaggaggtt 34989441  T
Q  109 cgtctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtg 208  Q
      ||||||||||||  ||||| || || |||||||| ||||  |||  | ||  | |||| ||||||||||||||||| |||||||||| |||| |||||    
T  34989440 tttctcctttttgtccgtaaagcttctccaacatgtgtctcgacaatacttcagtgttgtttgattgtgacactgtgatccatacacgacattcaaagtg 34989341  T
Q  209 tcccatgacctctttgctgtcgaaaacctttttggcaagagtggatttt 257  Q
    |||||  ||||||||||| || ||||||||||| |||||||||| ||||    
T  34989340 tcccacaacctctttgctatcaaaaacctttttagcaagagtggttttt 34989292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 2305628 - 2305842
Alignment:
Q  9 acatcatcaaatacaaaaacatacctcttttgttgcaagtggtttctcaacttagaaatcaatgaccctagatccatttcagagatatcttgagaagggt 108  Q
    |||| |||||| ||||||||||||||||| |  |||||||  |||||||||| | ||||||||   ||| ||||||||||| ||||||||| ||   |      
T  2305628 acattatcaaacacaaaaacatacctcttattctgcaagtactttctcaactcaaaaatcaattcacctcgatccatttcatagatatctttaggtagaa 2305727  T
Q  109 cgtctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtg 208  Q
      ||| ||||||||| || || || |||||||||| |||||| |||  | |||||||||||||||||||||| ||||| |||||||||| |||| |||||    
T  2305728 attctactttttgttcgtgaagcttcttcaacatgcatctcaacaagacttctatattgtatgattgtgacattgtgatccatacacgacattcaaagtg 2305827  T
Q  209 tcccatgacctcttt 223  Q
    |||||  ||||||||    
T  2305828 tcccacaacctcttt 2305842  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 29610855 - 29610903
Alignment:
Q  150 agcaacccctctatattgtatgattgtgacactgtgacccatacacgat 198  Q
    ||||| || |||||||||||||||||||| ||||||| |||||||||||    
T  29610855 agcaatccttctatattgtatgattgtgatactgtgatccatacacgat 29610903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 257
Target Start/End: Complemental strand, 27294708 - 27294623
Alignment:
Q  172 attgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggatttt 257  Q
    |||| |||||||||| |||||||||||| || | |||||| ||||| || |||||||| ||||| || ||| | ||||||| ||||    
T  27294708 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggttttt 27294623  T

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