View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4757-Insertion-1 (Length: 912)
Name: NF4757-Insertion-1
Description: NF4757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4757-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 110 - 700
Target Start/End: Original strand, 48239965 - 48240557
Alignment:
| Q |
110 |
aggtggatgaacatgcggcggattagctggtccgggaggatgtggacccggtggtccaggatggtgagaacccgagcctgccggtggaggtggattgcgc |
209 |
Q |
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| T |
48239965 |
aggtggatgaacatgcggcggatgagctggtccgggaggatgtggacccggtggtccaggatggtgagaacccgagcctgccggtggaggtggattgcgc |
48240064 |
T |
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| Q |
210 |
atatttctcgcaatagtagctttcttcgtttttcagcgatgagacgaaccacacttgtttttaccttatggaaatataattggtgaaccaatgaatcaaa |
309 |
Q |
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| T |
48240065 |
atatttctcgcaatagtagctttcttcgtttttcagcgatgagacgaaccacacttgtttttaccttatggaaatataattggtgaaccaatgaatcaaa |
48240164 |
T |
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| Q |
310 |
acaacgactatatttgtaggactcaagagaaaactctagtcttttactatctatcggtcaaaccacaagtagttgggtaactaacattcatacatatatc |
409 |
Q |
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| T |
48240165 |
acaacgactatatttgtaggactcaagagaaaactctagtcttttactatctatcggtcaaaccacaagtagttgggtaactaacattcatacatatatc |
48240264 |
T |
|
| Q |
410 |
atgatggttnnnnnnngctttaacatgtcacctggtcatgcgtgtagtaacacaattaagtttgaaaataggattgatttaacgtttgtatatgaattta |
509 |
Q |
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| T |
48240265 |
atgatggttaaaaaaagctttaacatgtcacctggtcatgcgtgtagtaacacaattaagtttgaaaataggattgatttaacgtttg--tatgagttta |
48240362 |
T |
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| Q |
510 |
atgtgataaatcaaaaggtaaaattgttcataaaatgttccgatgaacctagctcatttgataagggattaatgcacaatttgtgcaggaac-ggggaca |
608 |
Q |
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| T |
48240363 |
atgtgataaatcaaaaggtaaaattgttcataaaatgttccgctcaacttaactcatttgttaaggga-taatgcacaatttctgcagggacgggggaca |
48240461 |
T |
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| Q |
609 |
ccctacttatttattttaaaaaatgtgaatttctccagcca----attacttgacnnnnnnnnnnnttgttcatggaatatatattttctctataa |
700 |
Q |
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| T |
48240462 |
ccctatttatttatcttaaaaaatgtgaatttctccagccactagattacttgaccaaaaaaaaaattgttcatgaaatatatattttctctataa |
48240557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 819 - 912
Target Start/End: Original strand, 48240679 - 48240772
Alignment:
| Q |
819 |
atagatgaaattacaaggacattatatattcatacacataagtaaatgttgggtttgaactccaatcataacgtctgatcttacaattttgaca |
912 |
Q |
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| T |
48240679 |
atagatgaaattacaaggacattatatattcatacacataagtaaatgttggatttaaactccgatcataacgtctgatcttacaattttgaca |
48240772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 48239823 - 48239938
Alignment:
| Q |
7 |
attcaccatacaatcacatattcatatgcaatcagcgacggtg------atggtgtggagggtgaccatgtggcccaggaggaccaccaagtggaggtgg |
100 |
Q |
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| T |
48239823 |
attcaccatacaaccacatattcatatgcaatcagcgatggtgatggtgatggtgtggagggtgaccatgtggcccaggaggactaccaagtggaggtgg |
48239922 |
T |
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| Q |
101 |
ctgagaaccaggtgga |
116 |
Q |
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| T |
48239923 |
ctgagaaccaggtgga |
48239938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 598
Target Start/End: Complemental strand, 27862920 - 27862882
Alignment:
| Q |
559 |
tagctcatttgataagggattaatgcacaatttgtgcagg |
598 |
Q |
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| T |
27862920 |
tagctcatttgataagggat-aatgcacaatttgtgcagg |
27862882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 597
Target Start/End: Complemental strand, 8716486 - 8716442
Alignment:
| Q |
552 |
atgaacctagctcatttgataagggattaatgcacaatttgtgcag |
597 |
Q |
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| T |
8716486 |
atgaacttagctcatttgataaggga-taatgcacaatatgtgcag |
8716442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 598
Target Start/End: Original strand, 29114094 - 29114146
Alignment:
| Q |
545 |
tgttccgatgaacctagctcatttgataagggattaatgcacaatttgtgcagg |
598 |
Q |
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| T |
29114094 |
tgttcccatgaacttagctcatttgataaggga-taatgcacaatttgtgcagg |
29114146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 598
Target Start/End: Original strand, 12166081 - 12166126
Alignment:
| Q |
552 |
atgaacctagctcatttgataagggattaatgcacaatttgtgcagg |
598 |
Q |
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| T |
12166081 |
atgaacttagctcatttggtaagggat-aatgcacaatttgtgcagg |
12166126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 598
Target Start/End: Complemental strand, 23368835 - 23368783
Alignment:
| Q |
545 |
tgttccgatgaacctagctcatttgataagggattaatgcacaatttgtgcagg |
598 |
Q |
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| T |
23368835 |
tgttcccatgagcttagctcatttgataaggga-taatgcacattttgtgcagg |
23368783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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