View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4757-Insertion-4 (Length: 323)
Name: NF4757-Insertion-4
Description: NF4757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4757-Insertion-4 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 16479175 - 16478860
Alignment:
| Q |
8 |
gaaaataagttcagtgagatcatctctgaagaggaagttaatgtggttttgtttggtaaaagagatgattagggttaaagagatgattgagtgaaagata |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16479175 |
gaaaataagttcagtgagatcatctctgaagaggaagttaatgtggttttgtttggtaaaagagatgattagggttaaagagatgattgagtgaaagata |
16479076 |
T |
|
| Q |
108 |
tgattgagtttgttaagaatttatggaggaatccattttgataacctgagtgtaaatacttctgatatcagcctgatttctaaagtatctaagcctaagc |
207 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16479075 |
tgattgactttgttaagaatttatggaggaatccattttgataacctgagtgtaaatacttctgatatcagcctgatttctaaagtatctaagcctaagc |
16478976 |
T |
|
| Q |
208 |
atgctgtgactcatttaagatcaatttccttgtgttgttataagttcttgactaaaattaaggtgaacatgcttaatcttcttatgtctgaggttgtgtc |
307 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16478975 |
atgctgtgactcatttaagatccatttccttgtgttgttataagttcttgactaaaactaaggtgaacatgcttgatcttcttatgtctgaggttgtgtc |
16478876 |
T |
|
| Q |
308 |
cacttgtcaaacacgt |
323 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
16478875 |
cacttgtcaaacacgt |
16478860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University