View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4757-Insertion-6 (Length: 225)
Name: NF4757-Insertion-6
Description: NF4757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4757-Insertion-6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 17725224 - 17725441
Alignment:
| Q |
8 |
cgaactccataatattgtaacacaatttctacacaaatgcttataaataaattgcattcatgcaaggctgtcatctgaattgatattctgttgataaatt |
107 |
Q |
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| T |
17725224 |
cgaactccgtaatattgtaacacaatttctacacaaacgcttataaacaaattgcattcatgcaaggctgtcatctgaattgatattcagttgataaatt |
17725323 |
T |
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| Q |
108 |
tgactgtgatacctcattttctttgtttccctaaactttcattggcctcaattcttgaaagttaatgaattgaaaactttattgctgaattattgtagat |
207 |
Q |
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| T |
17725324 |
tgactgtgatacgtcgttttctttgtttccctaatctttcattggcctcaattcttgaaagttaatgaattgaaaactttattgctgaattattgtagat |
17725423 |
T |
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| Q |
208 |
aataaattatctatgagt |
225 |
Q |
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| T |
17725424 |
aataaattatctatgagt |
17725441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 19026453 - 19026670
Alignment:
| Q |
8 |
cgaactccataatattgtaacacaatttctacacaaatgcttataaataaattgcattcatgcaaggctgtcatctgaattgatattctgttgataaatt |
107 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
19026453 |
cgaactccgtaatattgtaacacaatttctacacaaacgcttataaacaaattgcattcatgcaaggctgtcatctgaattgatattcagttgataaatt |
19026552 |
T |
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| Q |
108 |
tgactgtgatacctcattttctttgtttccctaaactttcattggcctcaattcttgaaagttaatgaattgaaaactttattgctgaattattgtagat |
207 |
Q |
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| T |
19026553 |
tgactgtgatacgtcgttttctttgtttccctaatctttcattggcctcaattcttgaaagttaatgaattgaaaactttattgctgaattattgtagat |
19026652 |
T |
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| Q |
208 |
aataaattatctatgagt |
225 |
Q |
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|||||||||||||||||| |
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| T |
19026653 |
aataaattatctatgagt |
19026670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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