View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4757_high_4 (Length: 389)
Name: NF4757_high_4
Description: NF4757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4757_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 5662993 - 5663381
Alignment:
| Q |
1 |
tccatttccaaatttgcctaaatacgcccatatccgtgttcaataaaacgggaaaacacggttgaatgattattcaatacaagtgcatccaggtaattgt |
100 |
Q |
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| T |
5662993 |
tccatttccaaatttgcccaaatacgcccatatccgtgttcaataaaacggaaaaacacggttgaatgattattctatacaagtgcatccaggtaattgt |
5663092 |
T |
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| Q |
101 |
attagcaagattgaattcattgtttacggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagaagttaaaga |
200 |
Q |
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| T |
5663093 |
attagcaagattgaattcattgtttatggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagaagttaaaga |
5663192 |
T |
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| Q |
201 |
cacattagcttcacattctcctccatttcctgtcagttttggtactcacgagccagtagttatgttctgctgccttggtttataacttcttcatctttat |
300 |
Q |
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| T |
5663193 |
cacattagcttcacattctcctccatttcctgtcagttttggtactcacgagccagtagttatgttctgctgccttggtttataacttcttcatctttct |
5663292 |
T |
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| Q |
301 |
gttattatactactgttgttataatagttttcttctgtgctgatattgctaacatgttactataaactgcttatgagaatcatgtgttt |
389 |
Q |
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| T |
5663293 |
gttattatactactgttgttataatagttttcttctgtgctgatattgctaacatgttactataatctgcttatgagaatcatgtgttt |
5663381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 52131235 - 52131508
Alignment:
| Q |
1 |
tccatttccaaatttgcctaaatacgcccatatccgtgttcaataaaacgggaaaacacggttgaatgattattcaatacaagtgcatccaggtaattgt |
100 |
Q |
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| T |
52131235 |
tccatatccaaattcgcccaaatacgcccat--ccgtgttcagtaaaacga-agaacacggttgaatgattattcaatacaagtgcatccaggtaattgt |
52131331 |
T |
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| Q |
101 |
attagcaagattgaattcattgtttacggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagaagttaaaga |
200 |
Q |
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| T |
52131332 |
attagcaagattgaatttattattgacggtgtatctcaatccgatttcgaagcttctgtcatcggtaagaccatggtcgcttctcacaagaagtcaaaga |
52131431 |
T |
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| Q |
201 |
cacat-tagcttcacattctcctccatttcctgtcagttttggtactcacgagccagtagttatgttctgctgccttggttta |
282 |
Q |
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| T |
52131432 |
-acatgtagcgtcacgttatcctccatttcctgtcaattt-ggtactcacgaga----agttatgttctgctgccttggttta |
52131508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 11649320 - 11649155
Alignment:
| Q |
20 |
aaatacgcccatatccgtgttcaataaaacgggaaaacacggttgaatgattattcaatacaagtgcatccaggtaattgtattagcaagattgaattca |
119 |
Q |
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| T |
11649320 |
aaatacgcccat--ccgtgttcactaaaaaggaagaacacggttgaatgattattcaatacaagtgcatccaggtaattgtattagcaagattgaattca |
11649223 |
T |
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| Q |
120 |
ttgtttacggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcac |
187 |
Q |
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| T |
11649222 |
ttgttgacggtgtatctcgctccgacttcgaagcttctgtcatcggtaagaccatggtcgcttctcac |
11649155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 22007672 - 22007875
Alignment:
| Q |
36 |
gtgttcaataaaacgggaaaacacggttgaatgattattcaatacaagtgcatccaggtaattgtattagcaagattgaattcattgtttacggtgtatc |
135 |
Q |
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| T |
22007672 |
gtgttcagtaaaaaggaagaacactgttgaatgattattcaatacaggtgcatccagataagtgtattacgaagactgaattcattgttggcggtgtatc |
22007771 |
T |
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| Q |
136 |
tcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagaagttaaagacacat-tagcttcac----attctcctccatttcc |
230 |
Q |
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| T |
22007772 |
tcgcttcgacttcaaaacttctgtcatcgtcaagaccatggtcgcttttcacaagaagttaaaga-acatgtagcttcacgttgattctcctccatttcc |
22007870 |
T |
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| Q |
231 |
tgtca |
235 |
Q |
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| T |
22007871 |
tgtca |
22007875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 11649159 - 11649122
Alignment:
| Q |
245 |
ctcacgagccagtagttatgttctgctgccttggttta |
282 |
Q |
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| T |
11649159 |
ctcacgagccagcagttatgttctgctgccttggttta |
11649122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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