View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4757_high_5 (Length: 378)
Name: NF4757_high_5
Description: NF4757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4757_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 50572484 - 50572832
Alignment:
| Q |
19 |
actaattacggcttgaggtgtttttacttgcagaaatattgtttcaacagtaaattgggggcgtaagttagatctcaaagcgattggtcaccgagcttct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| || |
|
|
| T |
50572484 |
actaattacggcttgaggtgtttttacttgcagaaatattgtttcaacagtaaattgggggcgtaagttagatctcaaagcgattggtctccaagctcct |
50572583 |
T |
|
| Q |
119 |
aacactcgtattgtgacgtacaa-cccaaggcaagtttcatctgctcaatcgttgtgaatgtcatccaaatactatatgtgttatgtatgcaagtgtgtg |
217 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50572584 |
aacactcgtattgtgacgtacaagcccaaggcaagtttcatctgctcaatcgttgtgaatgtcatccaaatactatatgtgttatgtatgcaagtgtgtg |
50572683 |
T |
|
| Q |
218 |
cgttgcgcgcttgtgcttacttttcctttcaattggtaaatatgattgttttagaggcactgatgatcgtaatgcaaaattctttgcagcgtataccttt |
317 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
50572684 |
cgttgtgcgcttgtgcttgcttttcctttcaattggtaaatatgattgttttagaggcactgatgatcgtaatgcaaaattctttgtagcgtataccttt |
50572783 |
T |
|
| Q |
318 |
tctcgttatgaagatcagagaaccaaaaacaactgcacttatctctgct |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50572784 |
tctcgttatgaagatcagagaaccaaaaacaactgcacttatctctgct |
50572832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 140 - 361
Target Start/End: Original strand, 50566761 - 50566987
Alignment:
| Q |
140 |
aacccaaggcaagtttcatctgctcaatcgttgtgaatgtcatccaaatactatatgtgttatgtatgcaagtgtgtgcgttgcgcgcttgtgcttactt |
239 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| |||| ||||||| || |||||||||||||||||| |||| ||||| || |||||||||| |
|
|
| T |
50566761 |
aacccaaggcaagtttcatctgctcattcattgtgaatctcattcaaataccatctgtgttatgtatgcaagtctgtgtgttgcatgcgcgtgcttactt |
50566860 |
T |
|
| Q |
240 |
tt-cctttcaattggtaaatatgattgttttagaggcactgat----gatcgtaatgcaaaattctttgcagcgtataccttttctcgttatgaagatca |
334 |
Q |
| |
|
|| ||||| |||| |||||||| ||| ||||| ||||||||| | | || ||||||||||||||||||| | | ||||||||| |||||||||||| |
|
|
| T |
50566861 |
tttcctttgcattgataaatatgcttgctttagtggcactgatcgatgtttgtgatgcaaaattctttgcagcatttcccttttctcattatgaagatca |
50566960 |
T |
|
| Q |
335 |
gagaaccaaaaacaactgcacttatct |
361 |
Q |
| |
|
|| |||||||| ||||||||||||||| |
|
|
| T |
50566961 |
gaaaaccaaaagcaactgcacttatct |
50566987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 50566668 - 50566733
Alignment:
| Q |
39 |
tttttacttgcagaaatattgtttcaacagtaaattgggggcgtaagttagatctcaaagcgattg |
104 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||| | ||||||| |||||| |||| |||| |
|
|
| T |
50566668 |
tttttacttgcagaaatcttgtttcaacagtgaattggatgtgtaagttggatctcgaagcaattg |
50566733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 9987157 - 9987114
Alignment:
| Q |
323 |
ttatgaagatcagagaaccaaaaacaactgcacttatctctgct |
366 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
9987157 |
ttatgaggatcagagaaccaaaaacaactgcactcatctttgct |
9987114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University