View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4757_high_8 (Length: 317)

Name: NF4757_high_8
Description: NF4757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4757_high_8
NF4757_high_8
[»] chr8 (2 HSPs)
chr8 (21-175)||(5662688-5662842)
chr8 (248-305)||(5662913-5662970)
[»] scaffold0003 (2 HSPs)
scaffold0003 (64-171)||(36796-36903)
scaffold0003 (64-175)||(42974-43087)
[»] chr3 (5 HSPs)
chr3 (64-175)||(31688029-31688140)
chr3 (64-175)||(31896727-31896838)
chr3 (64-175)||(31912436-31912547)
chr3 (64-175)||(31946084-31946195)
chr3 (276-305)||(52131183-52131212)
[»] chr6 (1 HSPs)
chr6 (64-175)||(27444274-27444387)
[»] chr7 (2 HSPs)
chr7 (252-305)||(11649352-11649405)
chr7 (127-175)||(11649475-11649523)
[»] chr1 (2 HSPs)
chr1 (64-130)||(7608113-7608179)
chr1 (64-130)||(31771101-31771167)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 5662688 - 5662842
Alignment:
Q  21 atcctttgatttaatctgacttctaactttcatttccccatgccacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaact 120  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5662688 atcctttgatttaatctgacttcaaactttcatttccccatgccacaattcaaattcaagtttaccgtgcattgtaaatgacaaacaattaatgttaact 5662787  T
Q  121 gtttccaatacagtgttgcatatccatctcattgcgaaccatggctctgacctaa 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5662788 gtttccaatacagtgttgcatatccatctcattgcgaaccatggctctgacctaa 5662842  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 5662913 - 5662970
Alignment:
Q  248 cgcacaccgtccactccccctttctctataaatcgtgattcttccacttcttcctctc 305  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5662913 cgcacaccgtccactccccctttctctgtaaatcgtgattcttccacttcttcctctc 5662970  T

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Target: scaffold0003 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 36903 - 36796
Alignment:
Q  64 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatg 163  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||  ||| |||    
T  36903 cacaattcaaattcaagtttacagtgcattgtaaatgacaaataattaatgttatcggtttccaatacagtgttgcatatccatctcattggaaacaatg 36804  T
Q  164 gctctgac 171  Q
    ||||||||    
T  36803 gctctgac 36796  T

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Target: scaffold0003; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 43087 - 42974
Alignment:
Q  64 cacaattcaaattaaagtttaccgtgcattgtaaat-gacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcg-aacca 161  Q
    ||||||||||||| |||||||| ||||||||||||| |||||| | ||||||||| | ||||  ||||||||||||||||||||| |||||| | ||| |    
T  43087 cacaattcaaattcaagtttacggtgcattgtaaattgacaaatagttaatgttatcggttttgaatacagtgttgcatatccatttcattgggaaacaa 42988  T
Q  162 tggctctgacctaa 175  Q
    ||||||||||||||    
T  42987 tggctctgacctaa 42974  T

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Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 64 - 175
Target Start/End: Original strand, 31688029 - 31688140
Alignment:
Q  64 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatg 163  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| | |||||||||| |||||||||||||||||| ||||  ||| |||    
T  31688029 cacaattcaaattcaagtttacggtgcattgtaaatgacaaataattaatgttatcggtttccaataaagtgttgcatatccatcttattggaaacaatg 31688128  T
Q  164 gctctgacctaa 175  Q
    ||||||||||||    
T  31688129 gctctgacctaa 31688140  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 31896838 - 31896727
Alignment:
Q  64 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatg 163  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| |  ||||||||| |||||||||||||||||| ||||  ||| |||    
T  31896838 cacaattcaaattcaagtttactgtgcattgtaaatgacaaataattaatgttatcgatttccaataaagtgttgcatatccatcttattggaaacaatg 31896739  T
Q  164 gctctgacctaa 175  Q
    ||||||||||||    
T  31896738 gctctgacctaa 31896727  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 31912547 - 31912436
Alignment:
Q  64 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatg 163  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| |  ||||||||| |||||||||||||||||| ||||  ||| |||    
T  31912547 cacaattcaaattcaagtttactgtgcattgtaaatgacaaataattaatgttatcgatttccaataaagtgttgcatatccatcttattggaaacaatg 31912448  T
Q  164 gctctgacctaa 175  Q
    ||||||||||||    
T  31912447 gctctgacctaa 31912436  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 31946195 - 31946084
Alignment:
Q  64 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatg 163  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||| |  ||||||||| |||||||||||||||||| ||||  ||| |||    
T  31946195 cacaattcaaattcaagtttactgtgcattgtaaatgacaaataatgaatgttatcgatttccaataaagtgttgcatatccatcttattggaaacaatg 31946096  T
Q  164 gctctgacctaa 175  Q
    ||||||||||||    
T  31946095 gctctgacctaa 31946084  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 305
Target Start/End: Original strand, 52131183 - 52131212
Alignment:
Q  276 taaatcgtgattcttccacttcttcctctc 305  Q
    ||||||||||||||||||||||||||||||    
T  52131183 taaatcgtgattcttccacttcttcctctc 52131212  T

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Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 64 - 175
Target Start/End: Original strand, 27444274 - 27444387
Alignment:
Q  64 cacaattcaaattaaagtttaccgtgcattgtaaa-tgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcg-aacca 161  Q
    ||||||||||||| |||||||| |||||||||||| ||||||| | ||||||||| | ||||  ||||||||||||||||||||| |||||| | ||| |    
T  27444274 cacaattcaaattcaagtttacggtgcattgtaaattgacaaatagttaatgttatcggttttgaatacagtgttgcatatccatttcattgggaaacaa 27444373  T
Q  162 tggctctgacctaa 175  Q
    ||||||||||||||    
T  27444374 tggctctgacctaa 27444387  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 305
Target Start/End: Complemental strand, 11649405 - 11649352
Alignment:
Q  252 caccgtccactccccctttctctataaatcgtgattcttccacttcttcctctc 305  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11649405 caccgtccactccccctttctctgtaaatcgtgattcttccacttcttcctctc 11649352  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 11649523 - 11649475
Alignment:
Q  127 aatacagtgttgcatatccatctcattgcgaaccatggctctgacctaa 175  Q
    |||||| |||||||||||||||||||||  |||||||||| ||||||||    
T  11649523 aatacaatgttgcatatccatctcattggaaaccatggctttgacctaa 11649475  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 7608179 - 7608113
Alignment:
Q  64 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaata 130  Q
    |||||||||| || |||||||| ||| ||||||||||||||| |||||||||||   ||||||||||    
T  7608179 cacaattcaagttcaagtttacagtgtattgtaaatgacaaataattaatgttattggtttccaata 7608113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 31771167 - 31771101
Alignment:
Q  64 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaata 130  Q
    |||||||||| || || ||||| ||| ||||||||||||||| |||||||||||   ||||||||||    
T  31771167 cacaattcaagttcaaatttacagtgtattgtaaatgacaaataattaatgttattggtttccaata 31771101  T

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