View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4757_high_9 (Length: 295)
Name: NF4757_high_9
Description: NF4757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4757_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 37852479 - 37852197
Alignment:
| Q |
1 |
atatcaaggttagaattaatggattttggatttgcatagttgctttggtattttgttttactagagcatgctcctcaactatgatgcatgtgatctataa |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37852479 |
atatcaaggtcagaattaatggattttggatttgcatagttgctttggtattttgttttactagagcatgctcctcaactatgatgcatgtgatctataa |
37852380 |
T |
|
| Q |
101 |
catcaatatgcaaaattctgatatgattacctttaactaactttcacatcgaacataatatacctattttgttattttgttttacatcgaatatcaatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37852379 |
aatcaatatgcaaaattctgatatgattacctttaactaactttcacatcgaacataatatacctattt--------tgttttacatcgaatatcaatat |
37852288 |
T |
|
| Q |
201 |
gcatggatcttaatttttcaagtttatcttctttcctatgttggttcttgtgtcctcattgttatctgtcaatgcaaaatcgcagcctttg |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37852287 |
gcatggatcttaatttttcaagtttatcttctttcctatgttggttcttgtgtcctcattgttatctgtcgatgcaaaatcgcagcctttg |
37852197 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 32557073 - 32557036
Alignment:
| Q |
254 |
cctcattgttatctgtcaatgcaaaatcgcagcctttg |
291 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |
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| T |
32557073 |
cctcattgttatctgtcaatgcaaaatcgctgcctttg |
32557036 |
T |
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