View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4757_low_1 (Length: 716)
Name: NF4757_low_1
Description: NF4757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4757_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 334 - 710
Target Start/End: Complemental strand, 41648169 - 41647800
Alignment:
| Q |
334 |
ctgctagctccggtgattcggggaattcgaaagattggtgttggggtgggtctaatatgggaggtacttttcctactccaaaggagatttgtaaagggct |
433 |
Q |
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| T |
41648169 |
ctgctagctccggtgattcggggaattcgaaagattggtgttggggtgggtctaatatgggaggtacttttcctactccaaaggagatttgtaaagggct |
41648070 |
T |
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| Q |
434 |
tgataaacatgtaattggacaagaaagggccaagaaggtgctatctgtggcagtctataatcactataagagaatatattatgaaaagttgtggttggta |
533 |
Q |
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| T |
41648069 |
tgataaacatgtaattggacaagaaagggccaagaaggtgctatctgtggcagtctataatcactataagagaatatatcatgaaaagttgtggttggta |
41647970 |
T |
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| Q |
534 |
tattacttcagcatgttatgttattactttcatgcacatgttttacacnnnnnnnnnnnnnnnnnnngttgctaatgtaaagtgannnnnnncttcttca |
633 |
Q |
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| T |
41647969 |
tattacttcagcatgttatgttattactttcatgcacatgttttacac------tttttttatttttgttgctaatgtaaagtga-ttttttcttcttca |
41647877 |
T |
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| Q |
634 |
tgttcttactatttggaatgttaggcatgcaggagattcaaatattgatggtaaagccgatgttgttgttgatgatg |
710 |
Q |
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| T |
41647876 |
tgttcttactatttggaatgttaggcatgcaggagattcaaatattgatggtaaagccgatgttgttgttgatgatg |
41647800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 41648485 - 41648202
Alignment:
| Q |
18 |
cattcacactctccaccacgttcaccgttaatcaacaccccttatcacttcacttccttcaaatccctttctctccgcggcggcgatttcatccataaga |
117 |
Q |
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| T |
41648485 |
cattcacactctccaccacgttcaccgttaatcaacaccccttatcacttcacttccttcaaacccctttctctccgcggcgtcgatttcatccataaga |
41648386 |
T |
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| Q |
118 |
gtagtaataataatactactactgcctccacttccaccacccttatcgaagactctaatcaaaaccctaatcatgttccttatgatgtaaccgcttatag |
217 |
Q |
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| T |
41648385 |
gtagtaataataatacttctactgcctccacttccaccacccttatcgaagactctaatcaaaaccctaatcatgttccttatgatgtaaccgcttatag |
41648286 |
T |
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| Q |
218 |
ggtccttgtttcttcgtttgttgatcctcctgaagtttggtctggtggtggaattgttgttcgtcctgggaattatgatgtttc |
301 |
Q |
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| T |
41648285 |
ggtccttgtttcttcgtttgttgatcctcctgaagtttggtctggtggtggaattgttgttcgtcctgggaattatgatgtttc |
41648202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 140693 - 140736
Alignment:
| Q |
46 |
taatcaacaccccttatcacttcacttccttcaaatccctttct |
89 |
Q |
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| T |
140693 |
taatcaacactccttatcacttcacttccttaaaacccctttct |
140736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 148714 - 148757
Alignment:
| Q |
46 |
taatcaacaccccttatcacttcacttccttcaaatccctttct |
89 |
Q |
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| T |
148714 |
taatcaacactccttatcacttcacttccttaaaacccctttct |
148757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 411 - 472
Target Start/End: Original strand, 20567855 - 20567916
Alignment:
| Q |
411 |
ccaaaggagatttgtaaagggcttgataaacatgtaattggacaagaaagggccaagaaggt |
472 |
Q |
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| T |
20567855 |
ccaaaggagatttgtaaaggtcttgataagtttgttattggacaaggtagagccaagaaggt |
20567916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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