View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4757_low_11 (Length: 270)
Name: NF4757_low_11
Description: NF4757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4757_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 35384233 - 35383996
Alignment:
| Q |
12 |
atgagatgaagtgcatgttaaaatgtgaagggtgtatctgcaattacacaacttaaagtaccaaataaaaatagtacttaccaccaatnnnnnnncaaat |
111 |
Q |
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| T |
35384233 |
atgagaagaagtgcatgttaaaatgtaaagggtgtatatgcaattacacaatttaacgtaccaaataaaaatagtacttaccaccaataaaaaaacaaat |
35384134 |
T |
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| Q |
112 |
ataacagagaataaattgaattaaataaaatcttgtataagctaatggtattgcaacgtttatgaaacatagtacattttgcaaagtgaacaaataaatt |
211 |
Q |
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| T |
35384133 |
ataacagagaataaattgaattaaataaaatcttgtataagctaatggtattgcaacgtttatgaaacatagtacattttgcaaagggaacaaataaatt |
35384034 |
T |
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| Q |
212 |
gaactatttgaattaaatttgagccctatagatcaaga |
249 |
Q |
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| T |
35384033 |
gagctatttgaattaaatttgagccctatagatcaaga |
35383996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 35388078 - 35387865
Alignment:
| Q |
13 |
tgagatgaagtgcatgttaaaatgtgaagggtgtatctgcaattacacaacttaaagtaccaaataaaaatagtacttaccaccaatnnnnnnncaaata |
112 |
Q |
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||||| ||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35388078 |
tgagaagaaatgcatgttcaaatgtgaagggtgtatcagcaattacacaacttaaagtaccaaataaaaatagtacttaccaccaataaaaa---aaata |
35387982 |
T |
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| Q |
113 |
taacagagaataaattgaattaaataaaatcttgtataagctaatggtattgcaacgtttatgaaacatagtacattttgcaaagtgaacaaataaattg |
212 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| | |||||||||||| |
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| T |
35387981 |
taacagggaataaattgaattaaataaaatcttgtataagctaaaggtattgcaacatttctgaaacatagtacattttgcaaaggggacaaataaattg |
35387882 |
T |
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| Q |
213 |
aactatttgaattaaat |
229 |
Q |
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| T |
35387881 |
agctatttgaattaaat |
35387865 |
T |
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