View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4757_low_2 (Length: 488)
Name: NF4757_low_2
Description: NF4757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4757_low_2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 23860669 - 23861144
Alignment:
| Q |
1 |
aatctatttagaagcagaaacaagggcatcatatttagctttgaaaaatgcaaaaagagggtctctagcaggcacatgttccttcacagcaggatggttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23860669 |
aatctatttagaagcagaaacaagggcatcatatttagctttgaaaaatgcaaaaagagggtctctagcaggcacatgttccttcacagcaggatggttg |
23860768 |
T |
|
| Q |
101 |
agaaattcttggctccatttgtaaagctttggatacttttcagcaccgaacaatttcaaatctgctatgtcttgaattaaagggatccagaaagctatga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||| |||||||||| |
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|
| T |
23860769 |
agaaattcttggctccatttgtaaagctttggatacttttcagcattgaacaatttcaattcagctatgtcttgaatcaaagggatccaaaaagctatga |
23860868 |
T |
|
| Q |
201 |
acacagcagcaatatccacaaagttaatctcttctcccccaaagtacttgcccttcagctcattctcaagaatctgcagagcctcagatgattcttcaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
23860869 |
acacagcagcaatatccacaaagttaatctcttctcccccaaagtacttgttcttcagctcattctcaagaatctgcagagcctcggttgattcttcaac |
23860968 |
T |
|
| Q |
301 |
attcttctcgcgctctttctcatcgttaacagcataaacagctttgaatgaagaggtcacaatctgatcatttattagtaaatttttatgttagaaaata |
400 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
23860969 |
attcttctggcgctccttctcatcgttaacagcataaacagctttgaatgaagaggtcacaatctgatcatttattcgtaaatttttatgttagaaaata |
23861068 |
T |
|
| Q |
401 |
atcagcacaaacataacaatatagaatattcggcttaggtaacattttttnnnnnnntatacgtgtctgcgatctg |
476 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
23861069 |
atcagcacaaacgtaacgatatagaatattcgacttaggtaacatttttttaaaaaatatacgtgtctgcgatctg |
23861144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 23864215 - 23864586
Alignment:
| Q |
1 |
aatctatttagaagcagaaacaagggcatcatatttagctttgaaaaatgcaaaaagagggtctctagcaggcacatgttccttcacagcaggatggttc |
100 |
Q |
| |
|
||||||||| |||||||||||| ||||||| |||| |||||| ||||||||||||||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
23864215 |
aatctattttgaagcagaaacagctctatcatatctagccttgaaatttgcaaaaagagggtctctaagaggcacattctccttcacaattggatggttg |
23864314 |
T |
|
| Q |
101 |
agaaattcttggctccatttgtaaagctttggatacttttcagcaccgaacaatttcaaatctgctatgtcttgaattaaagggatccagaaagctatga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| || || |||||||| ||||||||||| |||||||||| |
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|
| T |
23864315 |
agaaattcttggctccatttgtaaagctttggatacttttcagcagtgaaccatttcaaccctattaagtcttgaaacaaagggatccaaaaagctatga |
23864414 |
T |
|
| Q |
201 |
acacagcagcaatatccacaaagttaatctcttctcccccaaagtacttgcccttcagctcattctcaagaatctgcagagcctcagatgattcttcaat |
300 |
Q |
| |
|
||||||||| |||||||||||| |||||| |||||||||||| ||||| |||||||||||||||| |||||||||||||| ||| |||||||||||| |
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|
| T |
23864415 |
acacagcagaaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcagctcattctcgagaatctgcagagctccagttgattcttcaat |
23864514 |
T |
|
| Q |
301 |
attcttctcgcgctctttctcatcgttaacagcataaacagctttgaatgaagaggtcacaatctgatcatt |
372 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||| || ||| ||||||||||||| |
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|
| T |
23864515 |
attcttctcgcgctctttctcatcgttaaaagcataaacagctttcaatgtaggagtcgcaatctgatcatt |
23864586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 79 - 324
Target Start/End: Original strand, 23839889 - 23840133
Alignment:
| Q |
79 |
ttccttcacagcaggatggttcagaaattcttggctccatttgtaaagctttggatacttttcagcaccgaacaatttcaaatctgctatgtcttgaatt |
178 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||| |||||||||| |||||||| ||| || ||||||||||| | |
|
|
| T |
23839889 |
ttccttcacaacaggatggtcaagaaattcttgactccaattgtaaagctttggaaacttttcagctgtgaacaattgcaaccctattatgtcttgaact |
23839988 |
T |
|
| Q |
179 |
aaagggatccagaaagctatgaacacagcagcaatatccacaaagttaatctcttctcccccaaagtacttgcccttcagctcattctcaagaatctgca |
278 |
Q |
| |
|
| ||||||||||| |||| ||| ||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||| ||||| ||| | |
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|
| T |
23839989 |
agagggatccagat-gctacgaaaacagcagcaatatccacaaagttaaactcttctcctccaaagtacttacccttcagctcattctgaagaaactgaa |
23840087 |
T |
|
| Q |
279 |
gagcctcagatgattcttcaatattcttctcgcgctctttctcatc |
324 |
Q |
| |
|
||||||||| || |||||| | |||||||||||||||||||||||| |
|
|
| T |
23840088 |
gagcctcagttgtttcttcgacattcttctcgcgctctttctcatc |
23840133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 39 - 324
Target Start/End: Original strand, 23843573 - 23843858
Alignment:
| Q |
39 |
ctttgaaaaatgcaaaaagagggtctctagcaggcacatgttccttcacagcaggatggttcagaaattcttggctccatttgtaaagctttggatactt |
138 |
Q |
| |
|
|||| ||||| || |||||||| ||||||| ||| | | |||||||||| ||||||||| ||||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
23843573 |
ctttaaaaaaggcgaaaagaggctctctaggaggaagagtttccttcacaacaggatggtcaagaaattcttgactccaattgtaaagctttgggaactt |
23843672 |
T |
|
| Q |
139 |
ttcagcaccgaacaatttcaaatctgctatgtcttgaattaaagggatccagaaagctatgaacacagcagcaatatccacaaagttaatctcttctccc |
238 |
Q |
| |
|
|||||| |||||||| || || | ||||||||||| || ||||| ||| || |||| ||| |||||||||||||| |||||||||| ||||||||| |
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|
| T |
23843673 |
ttcagctgtgaacaattgcagctcggttatgtcttgaactagagggacccaaaatgctacgaaaacagcagcaatatcgacaaagttaaactcttctcct |
23843772 |
T |
|
| Q |
239 |
ccaaagtacttgcccttcagctcattctcaagaatctgcagagcctcagatgattcttcaatattcttctcgcgctctttctcatc |
324 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| || |||||||| | || ||||||||||||||||||||||||||||||||| |
|
|
| T |
23843773 |
ccaaagtacttgtccttcagctcattctcaagaaagtgaagagcctcggttgcttcttcaatattcttctcgcgctctttctcatc |
23843858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 37 - 345
Target Start/End: Original strand, 23856663 - 23856971
Alignment:
| Q |
37 |
agctttgaaaaatgcaaaaagagggtctctagcaggcacatgttccttcacagcaggatggttcagaaattcttggctccatttgtaaagctttggatac |
136 |
Q |
| |
|
||||||||| | ||||| ||||| ||||||| ||||| || |||||| ||| |||||||| ||||||||||||||||| || |||| || ||| || |
|
|
| T |
23856663 |
agctttgaagtaggcaaagagaggttctctaggaggcatattttccttaacaattggatggttgagaaattcttggctccacttcgaaagtttgggacac |
23856762 |
T |
|
| Q |
137 |
ttttcagcaccgaacaatttcaaatctgctatgtcttgaattaaagggatccagaaagctatgaacacagcagcaatatccacaaagttaatctcttctc |
236 |
Q |
| |
|
||||||||| ||||||| ||| ||| ||| |||||||| ||||||||||| ||||||||| ||||||| ||||||||||||| |||||| || | |
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|
| T |
23856763 |
ttttcagcattcaacaattgcaaccctgttatttcttgaatcaaagggatccaaaaagctatgtacacagctgcaatatccacaattccaatctcctcac |
23856862 |
T |
|
| Q |
237 |
ccccaaagtacttgcccttcagctcattctcaagaatctgcagagcctcagatgattcttcaatattcttctcgcgctctttctcatcgttaacagcata |
336 |
Q |
| |
|
| |||||| ||||| |||||| |||||||||||||||||| ||||||||| || | |||||| |||||||||||||||||||||||| | ||| | || |
|
|
| T |
23856863 |
ctccaaagaacttgtccttcaactcattctcaagaatctgtagagcctcaattgttccttcaacattcttctcgcgctctttctcatcatgaacggtatg |
23856962 |
T |
|
| Q |
337 |
aacagcttt |
345 |
Q |
| |
|
||||||||| |
|
|
| T |
23856963 |
aacagcttt |
23856971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 205 - 324
Target Start/End: Complemental strand, 23853367 - 23853248
Alignment:
| Q |
205 |
agcagcaatatccacaaagttaatctcttctcccccaaagtacttgcccttcagctcattctcaagaatctgcagagcctcagatgattcttcaatattc |
304 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| |||||| ||||| ||||||||||||||||||||| |||||||||||| || ||||||| | | |
|
|
| T |
23853367 |
agcagcaatatccacaaagctaatctcctctcctccaaagaacttgtccttcagctcattctcaagaaactgcagagcctcgaataattcttcgcgagcc |
23853268 |
T |
|
| Q |
305 |
ttctcgcgctctttctcatc |
324 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
23853267 |
ttctcgcgctctttctcatc |
23853248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 205 - 324
Target Start/End: Complemental strand, 23850976 - 23850857
Alignment:
| Q |
205 |
agcagcaatatccacaaagttaatctcttctcccccaaagtacttgcccttcagctcattctcaagaatctgcagagcctcagatgattcttcaatattc |
304 |
Q |
| |
|
||||||||||||||||||| || |||||||| |||||| ||||| ||||||||||||||||||||| |||||||||||| || |||||||| | | |
|
|
| T |
23850976 |
agcagcaatatccacaaagcctatttcttctcctccaaagaacttgtccttcagctcattctcaagaaactgcagagcctcgaataattcttcacgagcc |
23850877 |
T |
|
| Q |
305 |
ttctcgcgctctttctcatc |
324 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
23850876 |
ttctcgcgctctttctcatc |
23850857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 205 - 324
Target Start/End: Complemental strand, 23855890 - 23855771
Alignment:
| Q |
205 |
agcagcaatatccacaaagttaatctcttctcccccaaagtacttgcccttcagctcattctcaagaatctgcagagcctcagatgattcttcaatattc |
304 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||| ||||| | ||||||| ||||||||||| |||||||||||| || |||||| | | || |
|
|
| T |
23855890 |
agcagcaatatccacaaaaccaatctcttctcctccaaagaacttgtcattcagcttattctcaagaaactgcagagcctcgaataattctttacgactc |
23855791 |
T |
|
| Q |
305 |
ttctcgcgctctttctcatc |
324 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
23855790 |
ttctcgcgttctttctcatc |
23855771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 324
Target Start/End: Original strand, 23801015 - 23801148
Alignment:
| Q |
191 |
aaagctatgaacacagcagcaatatccacaaagttaatctcttctcccccaaagtacttgcccttcagctcattctcaagaatctgcagagcctcagatg |
290 |
Q |
| |
|
|||| ||||| |||||||||||| || ||||| ||| || || || |||||| | ||| |||| |||||||||||||||| || |||||||| || |
|
|
| T |
23801015 |
aaagatatgaccacagcagcaatgtcaacaaaaccaatatcctccccaccaaagaatttgtccttgagctcattctcaagaaaatgaagagcctcttttg |
23801114 |
T |
|
| Q |
291 |
attcttcaatattcttctcgcgctctttctcatc |
324 |
Q |
| |
|
||| |||||| ||||||| || ||||||||||| |
|
|
| T |
23801115 |
tttcctcaatactcttctcacgttctttctcatc |
23801148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 23805770 - 23805910
Alignment:
| Q |
184 |
gatccagaaagctatgaacacagcagcaatatccacaaagttaatctcttctcccccaaagtacttgcccttcagctcattctcaagaatctgcagagcc |
283 |
Q |
| |
|
|||||| |||| ||||| |||||||||||| || ||||| ||| || ||||| |||||| | ||| | || |||||||||||||||| | |||||| |
|
|
| T |
23805770 |
gatccaaaaagatatgatcacagcagcaatgtcaacaaaaccaatatcctctccaccaaagaatttgtctttgagctcattctcaagaaatcgaagagcc |
23805869 |
T |
|
| Q |
284 |
tcagatgattcttcaatattcttctcgcgctctttctcatc |
324 |
Q |
| |
|
|| || ||| |||||| ||||||| || ||||||||||| |
|
|
| T |
23805870 |
tcttttgtttcctcaatactcttctcacgttctttctcatc |
23805910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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