View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4758-Insertion-11 (Length: 308)
Name: NF4758-Insertion-11
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4758-Insertion-11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 6 - 308
Target Start/End: Original strand, 47644873 - 47645175
Alignment:
| Q |
6 |
catattgttggttctaaaatatggtaccttacaataatacagtaatgttacttgtgtaggcttgtcacagggtacatggcgcccttagtagaatcattag |
105 |
Q |
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| T |
47644873 |
catattgttggttctaaaatatggtaccttacaataatacagtaatgttacttgtgtaggcttgtcacagggtacatggcgcccttagtagaatcattag |
47644972 |
T |
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| Q |
106 |
aacagcttggttacatagatggtcagaatctgtttggagctccctatgattttcgatatggtctagcagcaccaggtcacccatctcaagttggttccaa |
205 |
Q |
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| T |
47644973 |
aacagcttggttacatagatggtcagaatctgtttggagctccctatgattttcgatatggtctagcagcaccaagtcacccatctcaagttggttccaa |
47645072 |
T |
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| Q |
206 |
attcctaaacgacctaaagaatttgatagaaaaagcaagcaattccaatggagggaagccggtgatacttgtctcgcacagcttgggaggtttatttgtc |
305 |
Q |
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| T |
47645073 |
attcctaaacgacctaaagaatttgatagaaaaagcaagcaattccaatggagggaagccggtgatacttgtctcacacagcttgggaggtttatttgtc |
47645172 |
T |
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| Q |
306 |
ctc |
308 |
Q |
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| T |
47645173 |
ctc |
47645175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 166 - 307
Target Start/End: Original strand, 31641730 - 31641871
Alignment:
| Q |
166 |
gtctagcagcaccaggtcacccatctcaagttggttccaaattcctaaacgacctaaagaatttgatagaaaaagcaagcaattccaatggagggaagcc |
265 |
Q |
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| T |
31641730 |
gtctagcagcaccaggtcacccatctcaagttggttccaaattcctaaacgacctaaagaatttgatagaaaaagcaagcaattccaatggagggaagcc |
31641829 |
T |
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| Q |
266 |
ggtgatacttgtctcgcacagcttgggaggtttatttgtcct |
307 |
Q |
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| T |
31641830 |
actaatacttgtctcacacagattaggaggtttatttgtcct |
31641871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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