View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4758-Insertion-12 (Length: 294)

Name: NF4758-Insertion-12
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4758-Insertion-12
NF4758-Insertion-12
[»] chr2 (8 HSPs)
chr2 (72-292)||(14481514-14481734)
chr2 (188-293)||(14484995-14485100)
chr2 (188-293)||(14476331-14476436)
chr2 (101-277)||(14165509-14165679)
chr2 (175-277)||(14501923-14502025)
chr2 (192-277)||(14144671-14144756)
chr2 (192-277)||(14152653-14152738)
chr2 (175-292)||(14494436-14494553)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 6e-74; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 72 - 292
Target Start/End: Complemental strand, 14481734 - 14481514
Alignment:
Q  72 atgttggctactcatcgtcgttcagcttttctctatttcaaggccttaactttcttaccaaccccaaaaccttaccctctttttcatcactaccaatcac 171  Q
    ||||||||| | ||||||  | || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||  ||||||| ||    
T  14481734 atgttggctgcacatcgttatacaccttttctctatctcaaggccctaactttcttaccaaccccaaaaccttaccctcttttccatcgataccaattac 14481635  T
Q  172 cgacattttctcttcctttttgcaccaatacttcagattcaacctcttttgcagtgtcatacctcgtccacaatttgggcttttccccacaatttgcttc 271  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||| |||||||||||||||||||||||    
T  14481634 caacattttctcttcctttttgcaccaatacttcagattcaacctcttttgcagtctcatacctcatcaacaattttggcttttccccacaatttgcttc 14481535  T
Q  272 caaactttcctccatttacaa 292  Q
    ||||||||  |||| ||||||    
T  14481534 caaactttgttccacttacaa 14481514  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 188 - 293
Target Start/End: Original strand, 14484995 - 14485100
Alignment:
Q  188 tttttgcaccaatacttcagattcaacctcttttgcagtgtcatacctcgtccacaatttgggcttttccccacaatttgcttccaaactttcctccatt 287  Q
    ||||| |||||| |||||||||||||||| |||||| || || |||||| || ||||||| ||||||||||||||||||||||||||||||||||||| |    
T  14484995 tttttccaccaacacttcagattcaaccttttttgccgtctcttacctcatcaacaattttggcttttccccacaatttgcttccaaactttcctccact 14485094  T
Q  288 tacaat 293  Q
    ||||||    
T  14485095 tacaat 14485100  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 188 - 293
Target Start/End: Complemental strand, 14476436 - 14476331
Alignment:
Q  188 tttttgcaccaatacttcagattcaacctcttttgcagtgtcatacctcgtccacaatttgggcttttccccacaatttgcttccaaactttcctccatt 287  Q
    |||||||||||| ||||||||||||||||||||||| || || |||||| || ||||||| ||||||  |||||||| |||||||||||||||||||| |    
T  14476436 tttttgcaccaacacttcagattcaacctcttttgctgtctcctacctcatcaacaattttggctttgacccacaatctgcttccaaactttcctccact 14476337  T
Q  288 tacaat 293  Q
    ||||||    
T  14476336 tacaat 14476331  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 277
Target Start/End: Complemental strand, 14165679 - 14165509
Alignment:
Q  101 tctctatttcaaggccttaactttcttaccaaccccaaaaccttaccctctttttc-atcactaccaatcaccgacattttctcttcctttttgcaccaa 199  Q
    ||||||| ||||||||||||||||||||||| ||||||| ||| |||||||||| | |||| ||| ||       |||||||||| | ||| ||||||||    
T  14165679 tctctatctcaaggccttaactttcttaccagccccaaaccctaaccctcttttcccatcattactaa-------cattttctctacatttctgcaccaa 14165587  T
Q  200 tacttcagattcaacctcttttgcagtgtcatacctcgtccacaatttgggcttttccccacaatttgcttccaaact 277  Q
     |||||| |||||||||| |||||||  || |||||| | |||||||| || ||| ||||||||||||||||||||||    
T  14165586 cacttcaaattcaacctcatttgcagcctcttacctcattcacaattttgggtttaccccacaatttgcttccaaact 14165509  T

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Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 277
Target Start/End: Original strand, 14501923 - 14502025
Alignment:
Q  175 cattttctcttcctttttgcaccaatacttcagattcaacctcttttgcagtgtcatacctcgtccacaatttgggcttttccccacaatttgcttccaa 274  Q
    |||||||||||| ||| |||||||| ||||||||||||||||| ||| | || ||||||||| || ||||||| ||||||  ||||||||||||||||||    
T  14501923 cattttctcttcatttctgcaccaacacttcagattcaacctcattttctgtctcatacctcatcaacaattttggctttgacccacaatttgcttccaa 14502022  T
Q  275 act 277  Q
    |||    
T  14502023 act 14502025  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 277
Target Start/End: Original strand, 14144671 - 14144756
Alignment:
Q  192 tgcaccaatacttcagattcaacctcttttgcagtgtcatacctcgtccacaatttgggcttttccccacaatttgcttccaaact 277  Q
    ||||||||  ||||||||||||||||||||||||  || |||||| | |||||||| || |||  |||||||||||||||||||||    
T  14144671 tgcaccaacccttcagattcaacctcttttgcagcctcctacctcattcacaattttgggtttgacccacaatttgcttccaaact 14144756  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 277
Target Start/End: Original strand, 14152653 - 14152738
Alignment:
Q  192 tgcaccaatacttcagattcaacctcttttgcagtgtcatacctcgtccacaatttgggcttttccccacaatttgcttccaaact 277  Q
    |||||||| |||||||||||||||||| ||||||| || |||||| || ||||||| || |||  |||||||| ||||||||||||    
T  14152653 tgcaccaacacttcagattcaacctctcttgcagtctcctacctcatcaacaattttggttttgacccacaatctgcttccaaact 14152738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 292
Target Start/End: Original strand, 14494436 - 14494553
Alignment:
Q  175 cattttctcttcctttttgcaccaatacttcagattcaacctcttttgcagtgtcatacctcgtccacaatttgggcttttccccacaatttgcttccaa 274  Q
    |||||||||| | ||| ||||||||  |||| ||||||||||||||||| || ||||||||| | ||||| || || |||  |||||||| |||||||||    
T  14494436 cattttctctccatttatgcaccaacgcttctgattcaacctcttttgctgtctcatacctcattcacaagtttgggtttgacccacaatctgcttccaa 14494535  T
Q  275 actttcctccatttacaa 292  Q
    ||| | ||||| ||||||    
T  14494536 actctgctccacttacaa 14494553  T

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