View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4758-Insertion-13 (Length: 283)
Name: NF4758-Insertion-13
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4758-Insertion-13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 5 - 283
Target Start/End: Complemental strand, 44574264 - 44573984
Alignment:
| Q |
5 |
acacctttcaccctaaagttatggtacacaacttttatcatttcaatacctctcacttttgctcccttactaatttgattgttagagtgcttgtcattta |
104 |
Q |
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| T |
44574264 |
acacctttcaccctaaagttatggtacacaacttttatcatttcaatacctctcacttttgctcccttactaatttgattgttagagtgcttgtcattta |
44574165 |
T |
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| Q |
105 |
acttattcttatgagtagcatctcaacaatgatgtttctacaggtgacatgcataataatcctcatccaaatctagcatcatacctacaaag--gagtaa |
202 |
Q |
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| T |
44574164 |
acttattcttatgagtagcatctcaacaatgatgtttctacaagtgacatgcataataatcctcatccaaatctagcatcatacctacaaaggagagcaa |
44574065 |
T |
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| Q |
203 |
aattcaagatagacaaactcatctttaaacttcaacaaaatctcgcggaccatattcctcaacattttcctcacacactag |
283 |
Q |
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| T |
44574064 |
aatttaagatagaaaaactcatctttaaacttcaacaaaatctcgtggaccatattcgtcaacattttcctcacacactag |
44573984 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 41725533 - 41725467
Alignment:
| Q |
164 |
tcctcatccaaatctagcatcatacctacaaaggag--ta-aaattcaagatagacaaactcatctt |
227 |
Q |
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| T |
41725533 |
tcctcaaccaaatcttgcctcgtacctacaaaggagagtacaaattcaagatagacaaactcatctt |
41725467 |
T |
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