View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4758-Insertion-15 (Length: 218)
Name: NF4758-Insertion-15
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4758-Insertion-15 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 33702219 - 33702284
Alignment:
| Q |
10 |
ttcattagttttgagttagtcattaatgtttaacacagcaacactagtctatcaccaccaaaacct |
75 |
Q |
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| T |
33702219 |
ttcattagttttcagttagtcattaatgtttaacacagcaacactagtctatcaccaccaaaacct |
33702284 |
T |
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Target: scaffold0016 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 78094 - 78014
Alignment:
| Q |
138 |
aatgaaaagaccaaattcttctattcaaccttaacaataatcacatcactgttgttcgtttcatctgtagtttccccatcc |
218 |
Q |
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| T |
78094 |
aatgaaaagaccatattcttctattcaaccttgacaataatcacatcattgttgttccttccctctgtagtttccccatcc |
78014 |
T |
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Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 27510107 - 27510157
Alignment:
| Q |
27 |
agtcattaatgtttaacacagcaacactagtctatcaccaccaaaacctaa |
77 |
Q |
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| T |
27510107 |
agtcattaatgtttaacacagcaacactagtctatcaccatcaaaacctaa |
27510157 |
T |
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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 27510969 - 27511035
Alignment:
| Q |
32 |
ttaatgtttaacacagcaacactagtctatcaccaccaaaacc---taaattcatttgcactaaaaa |
95 |
Q |
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| T |
27510969 |
ttaatatttaacacagcaacaccagtctatcaccatcaaaacctaataaattcatttgcactaaaaa |
27511035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 27511138 - 27511203
Alignment:
| Q |
153 |
ttcttctattcaaccttaacaataatcacatcactgttgttcgtttcatctgtagtttccccatcc |
218 |
Q |
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| T |
27511138 |
ttcttctattcaaccttgacaataatcacattattgtcgttcctttcctccgtagtttccccatcc |
27511203 |
T |
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