View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4758-Insertion-16 (Length: 211)
Name: NF4758-Insertion-16
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4758-Insertion-16 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 56468656 - 56468542
Alignment:
| Q |
10 |
atcaaccaaccacatactcatctatagtct-ataatacaaagtacaaaaaacatgttctatctctacagtactaaattatctttactagaaagaaccacc |
108 |
Q |
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| T |
56468656 |
atcaaccaaccacatactcatctatagtcttataatacaaagtacaaaaaacatgttctatctctacagtactaaattatctttactagaaagaaccacc |
56468557 |
T |
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| Q |
109 |
ttgttgttctaggat |
123 |
Q |
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| T |
56468556 |
ttgttgttctaggat |
56468542 |
T |
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Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 56468523 - 56468464
Alignment:
| Q |
152 |
gcacaatatatacctgaaattggaagcacctcatattaattttcatatattttgttttgt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56468523 |
gcacaatatatacctgaaattggaagcacctcatattaattttcatatattttgttttgt |
56468464 |
T |
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