View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4758-Insertion-18 (Length: 177)
Name: NF4758-Insertion-18
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4758-Insertion-18 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 23307576 - 23307745
Alignment:
| Q |
8 |
tgatcagctttcttgaaccgtccattacttaaatactgcatgcaccatgggcaaattaacaaatatgagaaaataataattagtacgtctctaattataa |
107 |
Q |
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| T |
23307576 |
tgatcagctttcttgaaccgtccattacttaaatactgcatgcaccatgggcaaattaacaaatctgagaaaataataattagtacctccctaaatataa |
23307675 |
T |
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| Q |
108 |
gaccttttcgaagnnnnnnnnnttgttcatttttatgagatctctttgctctattcaactacattaatta |
177 |
Q |
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| T |
23307676 |
gacctttttgaagaaaaaaaaattgttcttttttatgagatctctttgctcttttcaactacattaatta |
23307745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 32067555 - 32067601
Alignment:
| Q |
8 |
tgatcagctttcttgaaccgtccattacttaaatactgcatgcacca |
54 |
Q |
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| T |
32067555 |
tgatcagcatttttgaaccgtccattacttagatactgcatgtacca |
32067601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 32090570 - 32090616
Alignment:
| Q |
8 |
tgatcagctttcttgaaccgtccattacttaaatactgcatgcacca |
54 |
Q |
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| T |
32090570 |
tgatcagcatttttgaaccgtccattacttagatactgcatgtacca |
32090616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 34895908 - 34895948
Alignment:
| Q |
137 |
tttttatgagatctctttgctctattcaactacattaatta |
177 |
Q |
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||||||| ||||||||||||| | ||||||||||||||||| |
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| T |
34895908 |
tttttataagatctctttgctattttcaactacattaatta |
34895948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 39184324 - 39184364
Alignment:
| Q |
137 |
tttttatgagatctctttgctctattcaactacattaatta |
177 |
Q |
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||||||| ||||||||||||| | ||||||||||||||||| |
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| T |
39184324 |
tttttataagatctctttgctattttcaactacattaatta |
39184364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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