View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4758-Insertion-19 (Length: 176)
Name: NF4758-Insertion-19
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4758-Insertion-19 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 4e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 27144262 - 27144430
Alignment:
| Q |
8 |
gaacaaacacagatttccctacttactcttcccaactaaaacaaattctttccatttctcaagttcagctcaataaccttgcttttgcatcagatgctgg |
107 |
Q |
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| T |
27144262 |
gaacaaacacagatttccccacttactcttcccaactaaaacaaattctttccatttctcaagttcaactcaataaccttgcttttgcatcagatgctgg |
27144361 |
T |
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| Q |
108 |
caagctttttggttggttttctggccttgctgctatttacctccctctctggcttgtcctcatcatcgg |
176 |
Q |
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| T |
27144362 |
caagctttttggttggttttctggccttgctgctatttacctccctctctggcttgtcctcatcatcgg |
27144430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 27159695 - 27159863
Alignment:
| Q |
8 |
gaacaaacacagatttccctacttactcttcccaactaaaacaaattctttccatttctcaagttcagctcaataaccttgcttttgcatcagatgctgg |
107 |
Q |
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| T |
27159695 |
gaacaaacacaaatttccctgcttactcttcccagctgaaacaacttctttccatttcacaagtagaactcaataaccttgcttttgcatcagatgctgg |
27159794 |
T |
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| Q |
108 |
caagctttttggttggttttctggccttgctgctatttacctccctctctggcttgtcctcatcatcgg |
176 |
Q |
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| T |
27159795 |
caaactttttggttggttttctggccttgctgctatttaccttcccttatggctcgtccttatcatcgg |
27159863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 27260236 - 27260149
Alignment:
| Q |
53 |
ttctttccatttctcaagttcagctcaataaccttgcttttgcatcagatgctggcaagctttttggttggttttctggccttgctgc |
140 |
Q |
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| T |
27260236 |
ttctttccatttctcaagtgcatttcaataaccatccttttacatctgatgccggaaaactttttcgccggttttctggccttgctgc |
27260149 |
T |
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