View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4758-Insertion-20 (Length: 143)

Name: NF4758-Insertion-20
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4758-Insertion-20
NF4758-Insertion-20
[»] chr8 (7 HSPs)
chr8 (8-143)||(33147687-33147822)
chr8 (8-142)||(33147820-33147957)
chr8 (50-108)||(33147671-33147729)
chr8 (15-139)||(33147796-33147923)
chr8 (8-142)||(33147874-33148011)
chr8 (8-57)||(33147800-33147849)
chr8 (7-90)||(33147983-33148066)


Alignment Details
Target: chr8 (Bit Score: 132; Significance: 6e-69; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 6e-69
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 33147822 - 33147687
Alignment:
Q  8 aatccatctccttctggaggagggaacgtttcgcctccttctggaggaggaaacaatccaaccccttcaggaggagggaacaattcaccatcaggaggag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33147822 aatccatctccttctggaggagggaacgtttcgcctccttctggaggaggaaacaatccaaccccttcaggaggagggaacaattcaccatcaggaggag 33147723  T
Q  108 gaaacaatccagccccttcaggaggagggaacaatt 143  Q
    ||||||||||||| ||||||||||||||||||||||    
T  33147722 gaaacaatccagctccttcaggaggagggaacaatt 33147687  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 33147957 - 33147820
Alignment:
Q  8 aatccatctccttctggaggagggaacgtttcgcctccttctggaggaggaaacaatccaaccccttcaggaggagggaacaat---tcaccatcaggag 104  Q
    |||||||||||| | | |||||| |||  ||| ||||||||||||||||||||||||||| | ||||| |||||||||||||||   || ||  ||| ||    
T  33147957 aatccatctcctacagaaggaggaaacagttcacctccttctggaggaggaaacaatccacctccttctggaggagggaacaatccatctcctacagaag 33147858  T
Q  105 gaggaaacaatccagccccttcaggaggagggaacaat 142  Q
    |||||||||||||| | ||||| |||||||||||||||    
T  33147857 gaggaaacaatccatctccttctggaggagggaacaat 33147820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 33147729 - 33147671
Alignment:
Q  50 ggaggaggaaacaatccaaccccttcaggaggagggaacaattcaccatcaggaggagg 108  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  |||||||    
T  33147729 ggaggaggaaacaatccagctccttcaggaggagggaacaattcaccatctagaggagg 33147671  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 33147923 - 33147796
Alignment:
Q  15 ctccttctggaggagggaacgtttcgcctccttctggaggaggaaacaatccaaccccttcaggaggagggaacaat---tcaccatcaggaggaggaaa 111  Q
    |||||||||||||||| |||  | | ||||||||||||||||| ||||||||| | ||| ||| |||||| ||||||   || || || |||||||| ||    
T  33147923 ctccttctggaggaggaaacaatccacctccttctggaggagggaacaatccatctcctacagaaggaggaaacaatccatctccttctggaggagggaa 33147824  T
Q  112 caatccagccccttcaggaggagggaac 139  Q
    ||||||| | ||||| ||||||||||||    
T  33147823 caatccatctccttctggaggagggaac 33147796  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 33148011 - 33147874
Alignment:
Q  8 aatccatctccttctggaggagggaacgtttcgcctccttctggaggaggaaacaatccaaccccttcaggaggagggaacaattcacca---tcaggag 104  Q
    ||||||||||||||||  |||||||||    | ||||||||||  ||||| ||||||||| | ||| ||| |||||| |||| ||||||    || ||||    
T  33148011 aatccatctccttctgatggagggaacaacccacctccttctgatggagggaacaatccatctcctacagaaggaggaaacagttcacctccttctggag 33147912  T
Q  105 gaggaaacaatccagccccttcaggaggagggaacaat 142  Q
    |||||||||||||| | ||||| |||||||||||||||    
T  33147911 gaggaaacaatccacctccttctggaggagggaacaat 33147874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 33147849 - 33147800
Alignment:
Q  8 aatccatctccttctggaggagggaacgtttcgcctccttctggaggagg 57  Q
    |||||||||||||||||||||||||||  | |  ||||||||||||||||    
T  33147849 aatccatctccttctggaggagggaacaatccatctccttctggaggagg 33147800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 33148066 - 33147983
Alignment:
Q  7 aaatccatctccttctggaggagggaacgtttcgcctccttctggaggaggaaacaatccaaccccttcaggaggagggaacaa 90  Q
    |||| |||||||||||||||||||||||  | | ||| ||||||  ||||| ||||||||| | ||||| |  |||||||||||    
T  33148066 aaattcatctccttctggaggagggaacaatccaccttcttctgatggagggaacaatccatctccttctgatggagggaacaa 33147983  T

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