View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4758-Insertion-4 (Length: 780)
Name: NF4758-Insertion-4
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4758-Insertion-4 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 604; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 8 - 758
Target Start/End: Original strand, 31683925 - 31684679
Alignment:
| Q |
8 |
caaaactcattagttcacttccaatcaaccctacaaaaacttgctacttccatcgcttgatgcgaatcatgacgtattccggcatcttctctcaacaaaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
31683925 |
caaaactcattagttcacttccaatcaaccctacaaaaacttgctacttccatcgcttgatacgaatcatgacgtattctggcatcttctctcaacaaaa |
31684024 |
T |
|
| Q |
108 |
tattactgagaatgagctagagattgagtacatgttaactgatgtatctctattactacttaaggacagtccaatgagtgtgataccaaatgtgaacggg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
31684025 |
tattactgagaatgagctagagattgagtacatgttaactgatgtatctctatgactacttaaggacagtccaatgagtgtggtaccaaatgtgaacggg |
31684124 |
T |
|
| Q |
208 |
atactcagtccagttatgatggagccatggcatcaattctcagcttggttaaaaaatga---tattacagcatttgaaacaacacatgggatgtcgtttt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
31684125 |
atactcagtccagttatgatggagccatggcatcaattctcagcttggttaaaaaatgatgatattacagcatttgaaacaacacatgggatgtcgttta |
31684224 |
T |
|
| Q |
305 |
gggattatcttgcacgtgactccaaaattaacaactcatttaacaaatcaatggcaaaagaaactcgattagtttccgatttgttggttgagaagtgcaa |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31684225 |
gggattatcttgcacgtgactccaaaattaacaactcatttaacgaatcaatggcaaaagaaactcgattagtttccgatttgttggttgagaagtgcaa |
31684324 |
T |
|
| Q |
405 |
gggagtgttcaatgaagtcgagtcattggttgacgttggaggaggtacggggaccatggcaaaaactcttgccaaatcattcccacaaatggagtgcatt |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31684325 |
gggagtgttcaatgaagtcgagtcattggttgatgttggaggaggtacagggaccatggcaaaaactcttgccaaatcattcccacaaatggagtgcatt |
31684424 |
T |
|
| Q |
505 |
gtatttgatcttccacatgttgttgatggtttgcaaggaagtgaaaacttaaactatgttggtggagacatgtttaaagaaattccgccaagagctgcaa |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31684425 |
gtatttgatcttccacatgttgttgatggtttgctaggaagtgaaaacttaaactatgttggtggagacatgtttaaagaaattccgccaacagctgcaa |
31684524 |
T |
|
| Q |
605 |
ttttgttgaaggtaata--nnnnnnnnnnagggatgttgaaggtaaatgttaaaatattcatctatggagnnnnnnnnnnngttgttttgaaaactcagt |
702 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
31684525 |
ttttgttgaaggtaatatttttttttatgagggatgttgaaggtaaatgttaaaatattcatttatggagtttttgtttat-ttgttttgaaaactcagt |
31684623 |
T |
|
| Q |
703 |
atccaatctaagaatcactaataacagccaattagataacatgtttcctggttctc |
758 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||||| |||||| |
|
|
| T |
31684624 |
atccaatctaagaatcactaataacggccaattagataacatttttcctcgttctc |
31684679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 58 - 619
Target Start/End: Original strand, 31710948 - 31711512
Alignment:
| Q |
58 |
catcgcttgatgcgaatcatgacgtattccggcatcttctctcaacaaaatattactgagaatgagctagagattgagtacatgttaactgatgtatctc |
157 |
Q |
| |
|
||||||||||||||||||||||| | |||||| ||||||||||| |||| ||| | |||||||||||| |||||||| ||||||||||||| |||| |
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|
| T |
31710948 |
catcgcttgatgcgaatcatgactcactccggcttcttctctcaaaaaaacgttatagggaatgagctagaaattgagtatatgttaactgatgcatcta |
31711047 |
T |
|
| Q |
158 |
tattactacttaaggacagtccaatgagtgtgataccaaatgtgaacgggatactcagtccagttatgatggagccatggcatcaattctcagcttggtt |
257 |
Q |
| |
|
| || |||| ||||||| ||||||||||||| |||| | ||| ||| || ||| ||||||||||||| | |||||| |||||||||| ||||||| |
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|
| T |
31711048 |
aactattactcaaggacaatccaatgagtgtggcaccatacgtgcacgcaatggtcaatccagttatgatgaatccatggtatcaattctctacttggtt |
31711147 |
T |
|
| Q |
258 |
aaaaaatga---tattacagcatttgaaacaacacatgggatgtcgttttgggattatcttgcacgtgactccaaaattaacaactcatttaacaaatca |
354 |
Q |
| |
|
||||||||| || || |||| || || |||||||||||||| ||||| ||| ||||||||||||| |||||||||||| ||||||| | ||| |
|
|
| T |
31711148 |
aaaaaatgacgatactaacacattcgagacgacacatgggatgtcaacatgggagtatgctgcacgtgactccgaaattaacaacttatttaacgagtca |
31711247 |
T |
|
| Q |
355 |
atggcaaaagaaactcgattagtttccgatttgttggttgagaagtgcaagggagtgttcaatgaagtcgagtcattggttgacgttggaggaggtacgg |
454 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
31711248 |
atggcaaatgatactcgattagtttctgatttgttggttgagaaatgcaagggagtgttcaatgaagttgagtcattggttgatgttggaggaggtacgg |
31711347 |
T |
|
| Q |
455 |
ggaccatggcaaaaactcttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgaaaactt |
554 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
31711348 |
ggaccatggcaaagactcttgtcaaatcattcccacaaatggagtgcattgtgtttgatcttccacatgttgttgatggcttgcaaggaagtgaaaagct |
31711447 |
T |
|
| Q |
555 |
aaactatgttggtggagacatgtttaaagaaattccgccaagagctgcaattttgttgaaggtaa |
619 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||| ||| || |||||||||||||||||||| |
|
|
| T |
31711448 |
aagatatgttggtggagacatgtttaaggaaattccaccagcagatgcaattttgttgaaggtaa |
31711512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 56 - 619
Target Start/End: Original strand, 31734352 - 31734918
Alignment:
| Q |
56 |
tccatcgcttgatgcgaatcatgacgtattccggcatcttctctcaacaaaatattactgagaatgagctagagattgagtacatgttaactgatgtatc |
155 |
Q |
| |
|
||||||||||||||||||||||||| | || ||| |||||||||||||||||||| | | |||||||| ||| |||||||| ||||||||||||| ||| |
|
|
| T |
31734352 |
tccatcgcttgatgcgaatcatgactcactctggcttcttctctcaacaaaatattgcggcgaatgagccagaaattgagtatatgttaactgatgcatc |
31734451 |
T |
|
| Q |
156 |
tctattactacttaaggacagtccaatgagtgtgataccaaatgtgaacgggatactcagtccagttatgatggagccatggcatcaattctcagcttgg |
255 |
Q |
| |
|
| |||| |||||||||| | |||||||||||||| |||| ||| ||| ||| ||| ||||||||||||| | || |||||||||||||| ||| |
|
|
| T |
31734452 |
tagattattacttaaggataatccaatgagtgtgacaccattcgtgtacgcgatgctcgatccagttatgatgaatccttggcatcaattctctatgtgg |
31734551 |
T |
|
| Q |
256 |
ttaaaaaatgat---attacagcatttgaaacaacacatgggatgtcgttttgggattatcttgcacgtgactccaaaattaacaactcatttaacaaat |
352 |
Q |
| |
|
|||||||||||| | |||| |||||||||| ||||| ||||||| ||| ||||| ||| ||| ||||||||||| ||||||||| |||||| | | |
|
|
| T |
31734552 |
ttaaaaaatgatgatactacatcatttgaaacgacacacgggatgttgttatgggaatatgctgcgtgtgactccaaatttaacaacttatttaatgagt |
31734651 |
T |
|
| Q |
353 |
caatggcaaaagaaactcgattagtttccgatttgttggttgagaagtgcaagggagtgttcaatgaagtcgagtcattggttgacgttggaggaggtac |
452 |
Q |
| |
|
|||||||||| || ||| |||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| || |
|
|
| T |
31734652 |
caatggcaaatgatgctcaattagtttccaatttgttggttgagaagtgcaagggagtgttcaatgaatttgagtcattggttgatgttggaggaggaac |
31734751 |
T |
|
| Q |
453 |
ggggaccatggcaaaaactcttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgaaaac |
552 |
Q |
| |
|
||||| |||||||| ||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
31734752 |
agggactatggcaaagacttttgccaaatcattcccacaaatggagtgcattgtgtttgatctaccacatgttgttgatggtttgcaaggaagtgagaat |
31734851 |
T |
|
| Q |
553 |
ttaaactatgttggtggagacatgtttaaagaaattccgccaagagctgcaattttgttgaaggtaa |
619 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| |
|
|
| T |
31734852 |
ctaagctatgttggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaa |
31734918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 28 - 619
Target Start/End: Original strand, 31702484 - 31703078
Alignment:
| Q |
28 |
ccaatcaaccctacaaaaacttgctacttccatcgcttgatgcgaatcatgacgtattccggcatcttctctcaacaaaatattactgagaatgagctag |
127 |
Q |
| |
|
|||||| ||||| ||||||| |||| | | ||||||||||||||||| ||||| |||| | ||||||||||| | ||| |||| ||||||||||||| |
|
|
| T |
31702484 |
ccaatccacccttcaaaaacatgcttcattcatcgcttgatgcgaataatgactcattctagtttcttctctcaatataatgttaccgagaatgagctag |
31702583 |
T |
|
| Q |
128 |
agattgagtacatgttaactgatgtatctctattactacttaaggacagtccaatgagtgtgataccaaatgtgaacgggatactcagtccagttatgat |
227 |
Q |
| |
|
| || ||||| |||||||| |||| ||| ||||| |||||||||||| ||| ||||| |||| |||| ||| ||| ||| ||| ||||||| ||| |
|
|
| T |
31702584 |
aaatcgagtatatgttaaccgatgcatcgatattattacttaaggacaatccgatgagcgtgacaccatttgtacacgcgatgctcgatccagttttgac |
31702683 |
T |
|
| Q |
228 |
ggagccatggcatcaattctcagcttggttaaaaaatgat-at--tacagcatttgaaacaacacatgggatgtcgttttgggattatcttgcacgtgac |
324 |
Q |
| |
|
| || |||||||||||||| ||||||||||||||||| || |||| |||||||||| ||||| |||||| ||| ||||| ||| |||| ||||| |
|
|
| T |
31702684 |
aaatccgtggcatcaattctctacttggttaaaaaatgatgatcctacaacatttgaaacgacacacaggatgttgttatgggaatatgttgcgtgtgac |
31702783 |
T |
|
| Q |
325 |
tccaaaattaacaactcatttaacaaatcaatggcaaaagaaactcgattagtttccgatttgttggttgagaagtgcaagggagtgttcaatgaagtcg |
424 |
Q |
| |
|
|||||| ||| ||||| ||| || | || ||||||| || ||||||||||| || |||||||| |||||||||||| |||||| ||||||| | | |
|
|
| T |
31702784 |
tccaaatttagcaacttattcaatgagtccatggcaagtgatactcgattagtgaccaatttgttgattgagaagtgcaggggagtattcaatgggttgg |
31702883 |
T |
|
| Q |
425 |
agtcattggttgacgttggaggaggtacggggaccatggcaaaaactcttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgt |
524 |
Q |
| |
|
||||||||||||| |||||||| || || |||||||||||||| | ||||| |||||||||||||||||||||| | |||||||||||| |||||||| |
|
|
| T |
31702884 |
agtcattggttgatgttggaggtggcacagggaccatggcaaaggcccttgctaaatcattcccacaaatggagtttagtgtatttgatctaccacatgt |
31702983 |
T |
|
| Q |
525 |
tgttgatggtttgcaaggaagtgaaaacttaaactatgttggtggagacatgtttaaagaaattccgccaagagctgcaattttgttgaaggtaa |
619 |
Q |
| |
|
||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||| |||| || || |||||||||||||||| |
|
|
| T |
31702984 |
tgttgatggcttgcaaggtagtgagaatctaaactatgttggtggagacatgtttaaagaaattcctccaacagacgccattttgttgaaggtaa |
31703078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 406 - 619
Target Start/End: Original strand, 31714268 - 31714481
Alignment:
| Q |
406 |
ggagtgttcaatgaagtcgagtcattggttgacgttggaggaggtacggggaccatggcaaaaactcttgccaaatcattcccacaaatggagtgcattg |
505 |
Q |
| |
|
||||||||||||| | | || ||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||| | ||||||| || |
|
|
| T |
31714268 |
ggagtgttcaatggattggaatcattggttgatgttggaggaggcacagggaccatggcaaaggctcttgccaaatcattcccacaattagagtgcactg |
31714367 |
T |
|
| Q |
506 |
tatttgatcttccacatgttgttgatggtttgcaaggaagtgaaaacttaaactatgttggtggagacatgtttaaagaaattccgccaagagctgcaat |
605 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| |||||||| |||||| ||| | ||| || |
|
|
| T |
31714368 |
tgtttgatcttccacatgttgttgatggcttgcaaggaggtgataacttaaactatgttggtggagatatgtttaagagaattcctccagctgatgctat |
31714467 |
T |
|
| Q |
606 |
tttgttgaaggtaa |
619 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
31714468 |
tttgttgaaggtaa |
31714481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 481 - 579
Target Start/End: Original strand, 30570360 - 30570458
Alignment:
| Q |
481 |
tcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgaaaacttaaactatgttggtggagacatgttt |
579 |
Q |
| |
|
||||||||| | || |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| || ||||||||| |
|
|
| T |
30570360 |
tcattcccaaacattgagtgcattgtatttgatcttccacatgttgttgatggcttacaaggaagtgaaaacttaaaatatgttggaggtgacatgttt |
30570458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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