View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4758-Insertion-6 (Length: 692)

Name: NF4758-Insertion-6
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4758-Insertion-6
NF4758-Insertion-6
[»] chr4 (1 HSPs)
chr4 (8-692)||(45775123-45775807)


Alignment Details
Target: chr4 (Bit Score: 669; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 8 - 692
Target Start/End: Complemental strand, 45775807 - 45775123
Alignment:
Q  8 gtttttcccgtctgtaatcatacattcatactatactggtagtggtactgttactactattggatatttgagagagaataagagagtaggtacagagtga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45775807 gtttttcccgtctgtaatcatacattcatactatactggtagtggtactgttactactattggatatttgagagagaataagagagttggtacagagtga 45775708  T
Q  108 gtacagtcatagacactatgcgggtgcagactgcgtggtgcgtacggtacgaagactaagaaaatcagcaaagaatttgggatgggaaagtggggtcaat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  45775707 gtacagtcatagacactatgcgggtgcagactgcgtggtgcgtacggtacgaagactaagaaaatcagcaaagaatttgggatgggaaagtggggtcact 45775608  T
Q  208 gtgggcccaaatggggaacttgtgccttcactccaaccgactggcccttagcctatagttggtggttcatgatagtgacacccattaaaacggtggagaa 307  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45775607 gtgggcccaaatggggagcttgtgccttcactccaaccgactggcccttagcctatagttggtggttcatgatagtgacacccattaaaacggtggagaa 45775508  T
Q  308 gaggtgctaccaaagagaaccatcaaatatcatatcttttttccaatctcaaagattttgaaagcatgcatcacatatttgcatataaatccatatttac 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45775507 gaggtgctaccaaagagaaccatcaaatatcatatcttttttccaatctcaaagattttgaaagcatgcatcacatatttgcatataaatccatatttac 45775408  T
Q  408 tacaaacacccctttaaaataacttccaatattaccttaatttttgctttcacgctttcacttgtgtgtaactaactgtttgcatagaatagattggaaa 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45775407 tacaaacacccctttaaaataacttccaatattaccttaatttttgctttcacgctttcacttgtgtgtaactaactgtttgcatagaatagattggaaa 45775308  T
Q  508 tgaatgaaattagcaaacacagtcacaagctacctagcaaaagccttgaaaatttcataatagatgtggacaatgacaagtaccggtagacctaaatgga 607  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45775307 tgaatgaaataagcaaacacagtcacaagctacctagcaaaagccttgaaaatttcataatagatgtggacaatgacaagtaccggtagacctaaatgga 45775208  T
Q  608 ccgtcccatgtgcatgtgaacatgttcccatcatattacctgttcactcaacaaatcaccgtcacttccctacgttttcgcttga 692  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45775207 ccgtcccatgtgcatgtgaacatgttcccatcatattacctgttcactcaacaaatcaccgtcacttccctacgttttcgcttga 45775123  T

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