View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4758-Insertion-7 (Length: 629)

Name: NF4758-Insertion-7
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4758-Insertion-7
NF4758-Insertion-7
[»] chr6 (2 HSPs)
chr6 (7-629)||(10071729-10072350)
chr6 (54-139)||(10103697-10103780)


Alignment Details
Target: chr6 (Bit Score: 567; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 7 - 629
Target Start/End: Complemental strand, 10072350 - 10071729
Alignment:
Q  7 aaaaacaccaaaatcctcataaacgatcataggcaagttctccttctctagatctcggaatttacctagctcttaagagaaagacatgaattaatatttt 106  Q
    ||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10072350 aaaaacatcaaaatcctcataaacaatcatagacaagttctccttctctagatctcggaatttacctagctcttatgagaaagacatgaattaatatttt 10072251  T
Q  107 gtatagatattattagttcaaaacgatgaaattcgtagcacttgatccatggaaagtatggattctatattcaatgatagaaaaatgctatcaatagcat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10072250 gtatagatattattagttcaaaacgatgaaattcgtagcacttgatccatggaaagtatggattctatattcagtgatagaaaaatgctatcaatagcat 10072151  T
Q  207 tttttatcactatatgaagaattttttcgtggatttgggttgacgaattacatcatttgaactattacaatgagccaaccgttctagagtccaacaacaa 306  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10072150 tttttgtcactatatgaagaatttttt-gtggatttgggttgacgaattacatcatttgaactattacaatgagccaaccgtgctagagtccaacaacaa 10072052  T
Q  307 tgcttctgcaacttgacaagaaccaacatcttgtttagtaccatgctagacaagaactagcacattgttgattctcataggaaaagttgtgttcacatcc 406  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10072051 tgcttctgcaacttgacaagaaccaacatcttgcttagtaccatgctagacaagaactagcacattgttgattctcataggaaaagttgtgttcacatcc 10071952  T
Q  407 tgtttcttttaattttctttttagctaaagaaagagaggatgattgctacacacacataatgtagctaaggtaataactaaagcaatgtcatttgtgcat 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10071951 tgtttcttttaattttctttttagctaaagaaagagaggatgattgctacccacacataatgtagctaaggtaataactaaagcaatgtcatttgtgcat 10071852  T
Q  507 tatttgtcttatggtctcgttcatctgtgtagagaaaaatacatgcttatggagtcttttacaagtttggcagagttcattcttaacatctatattttca 606  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10071851 tatttgtcttatggtctcgttcatctgtgtagaggaaaatacatgcttatggagccttttacaagtttggcagagttcattcttaacatctatattttca 10071752  T
Q  607 agttattccatgatttagttgtg 629  Q
    |||| ||||||||||||||||||    
T  10071751 agttgttccatgatttagttgtg 10071729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 10103780 - 10103697
Alignment:
Q  54 ctagatctcggaatttacctagctcttaagagaaagacatgaattaatattttgtatagatattattagttcaaaacgatgaaatt 139  Q
    |||||||| |||| |||| ||||||||| | | |||| |||||||||||||  ||||||||  |||||||||||| ||||||||||    
T  10103780 ctagatcttggaagttacgtagctcttatggggaagagatgaattaatatt--gtatagattatattagttcaaagcgatgaaatt 10103697  T

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