View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4758-Insertion-8 (Length: 621)
Name: NF4758-Insertion-8
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4758-Insertion-8 |
 | |
|
| [»] chr5 (10 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 566; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 8 - 621
Target Start/End: Complemental strand, 29965642 - 29965029
Alignment:
| Q |
8 |
aacatataataaaaactagcaatactcattaacttaatctattcaagcaccattagaccaacttataacatctttaccagtaataaacttgttgaataca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29965642 |
aacatataataaaaactagcaatactcattaacttattctattcaagcaccattagaccaacttataacatctttactagtaataaacttgttgaataca |
29965543 |
T |
|
| Q |
108 |
agcataataatgtcctttatggacctattcaagcttctcatcacattccaaacgataactcggtattgcgtgcaagtgttgagcccttggtatagtgact |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29965542 |
agcataataatgtcctttatggacctattcaagcttctcatcacattccaaacgataactcggtattgcgtgcaaatgttgagcccttggtatagtgact |
29965443 |
T |
|
| Q |
208 |
ccaaatttctcttccatattcaaatcggaagggctaatattatgtggaagttcccaattaaaggaatgcaccaattgagctacaacaaatctaacagtaa |
307 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29965442 |
ccaaatttctcttccatattcaaattggaagggctaatattatgtggaagttcccaattaaagcaatgcaccaattgagctacaacaaatctaaccgtaa |
29965343 |
T |
|
| Q |
308 |
ccaaacccaattgaatcccaggacaacgtctacgacctgaaccaaatggtatagattcaaattcttgtccttgataattcattttcttatcactaaatct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29965342 |
ccaaacccaattgaatcccaggacaacgtctacgacctgaaccaaatggtatagattcaaattgctgtccttgataattcattttcttatcactaaatct |
29965243 |
T |
|
| Q |
408 |
ctctggataaaactcatcagcattttctgaccaaacatttgaatctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatat |
507 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29965242 |
ctctggataaaactcatcagcgttttctaaccaaatatttgaatctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatat |
29965143 |
T |
|
| Q |
508 |
ccatcaattgttatgctttctctacattcacgaggaagtaataagggtccaacggggtaaagtcttaatgtctcatcaaccaccatatctaagtaattca |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29965142 |
ccatcaattgttatgctttctctacattcacgaggaagtaataagggtccaacagggtaaagtcttaatgtctcatcaaccaccatatctaagtaattca |
29965043 |
T |
|
| Q |
608 |
acttcttcaaatca |
621 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29965042 |
acttcttcaaatca |
29965029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 8 - 621
Target Start/End: Original strand, 30009156 - 30009769
Alignment:
| Q |
8 |
aacatataataaaaactagcaatactcattaacttaatctattcaagcaccattagaccaacttataacatctttaccagtaataaacttgttgaataca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30009156 |
aacatataataaaaactagcaatactcattaacttattctattcaagcaccattagaccaacttataacatctttactagtaataaacttgttgaataca |
30009255 |
T |
|
| Q |
108 |
agcataataatgtcctttatggacctattcaagcttctcatcacattccaaacgataactcggtattgcgtgcaagtgttgagcccttggtatagtgact |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30009256 |
agcataataatgtcctttatggacctattcaagcttctcatcacattccaaacgataactcggtattgcgtgcaaatgttgagcccttggtatagtgact |
30009355 |
T |
|
| Q |
208 |
ccaaatttctcttccatattcaaatcggaagggctaatattatgtggaagttcccaattaaaggaatgcaccaattgagctacaacaaatctaacagtaa |
307 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30009356 |
ccaaatttctcttccatattcaaattggaagggctaatattatgtggaagttcccaattaaagcaatgcaccaattgagctacaacaaatctaaccgtaa |
30009455 |
T |
|
| Q |
308 |
ccaaacccaattgaatcccaggacaacgtctacgacctgaaccaaatggtatagattcaaattcttgtccttgataattcattttcttatcactaaatct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30009456 |
ccaaacccaattgaatcccaggacaacgtctacgacctgaaccaaatggtatagattcaaattgctgtccttgataattcattttcttatcactaaatct |
30009555 |
T |
|
| Q |
408 |
ctctggataaaactcatcagcattttctgaccaaacatttgaatctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatat |
507 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30009556 |
ctctggataaaactcatcagcgttttctaaccaaatatttgaatctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatat |
30009655 |
T |
|
| Q |
508 |
ccatcaattgttatgctttctctacattcacgaggaagtaataagggtccaacggggtaaagtcttaatgtctcatcaaccaccatatctaagtaattca |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30009656 |
ccatcaattgttatgctttctctacattcacgaggaagtaataagggtccaacagggtaaagtcttaatgtctcatcaaccaccatatctaagtaattca |
30009755 |
T |
|
| Q |
608 |
acttcttcaaatca |
621 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30009756 |
acttcttcaaatca |
30009769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 86 - 603
Target Start/End: Complemental strand, 29954296 - 29953779
Alignment:
| Q |
86 |
agtaataaacttgttgaatacaagcataataatgtcctttatggacctattcaagcttctcatcacattccaaacgataactcggtattgcgtgcaagtg |
185 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| ||||||| || |||||||||| | | ||||||||| ||||||||||| |||||||| | |||||||| |
|
|
| T |
29954296 |
agtaataaacttattgcatacaagcataatattgtccttcttgaacctattcaaccctgtcatcacatgccaaacgataagtcggtattacatgcaagtg |
29954197 |
T |
|
| Q |
186 |
ttgagcccttggtatagtgactccaaatttctcttccatattcaaatcggaagggctaatattatgtggaagttcccaattaaaggaatgcaccaattga |
285 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||| ||||||||||||| |||||| || ||||||| |||||||||||||| ||| ||||||||||||| |
|
|
| T |
29954196 |
ttgagctcttggtatagtgagtccaaatttctcctccatattcaaattggaaggactgatattatatggaagttcccaatcaaaacaatgcaccaattgg |
29954097 |
T |
|
| Q |
286 |
gctacaacaaatctaacagtaaccaaacccaattgaatcccaggacaacgtctacgacctgaaccaaatggtatagattcaaattcttgtccttgataat |
385 |
Q |
| |
|
|| | ||| || |||| || || |||||| ||||||| |||||||||||||| || || ||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
29954096 |
gcaataaccaacttaacggtcactaaacccgattgaattccaggacaacgtctgcggccagaaccaaatggtagagattcaaactcttgtccttgataat |
29953997 |
T |
|
| Q |
386 |
tcattttcttatcactaaatctctctggataaaactcatcagcattttctgaccaaacatttgaatctctccctatagcccatgcatttactataactcg |
485 |
Q |
| |
|
|||||||||| || | ||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29953996 |
tcattttcttgccaatgaatctctctgggtaaaattcttcggcattttctgaccaaacatttgaatctctccctatagcccatgcatttactataactcg |
29953897 |
T |
|
| Q |
486 |
tgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgaggaagtaataagggtccaacggggtaaagtcttaatgtctcatca |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| |||| |||||||||||||| || |||| | |
|
|
| T |
29953896 |
agtcttttcctttataaaatatccatcaattgttacactctctctacattcacgagggagtaataagggtgcaacagggtaaagtcttaaagtttcatga |
29953797 |
T |
|
| Q |
586 |
accaccatatctaagtaa |
603 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
29953796 |
accaccatctctaagtaa |
29953779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 154 - 616
Target Start/End: Complemental strand, 30007776 - 30007314
Alignment:
| Q |
154 |
tccaaacgataactcggtattgcgtgcaagtgttgagcccttggtatagtgactccaaatttctcttccatattcaaatcggaagggctaatattatgtg |
253 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||||| |||||||||| || |||||||||||| ||||||||||||| |||||| ||||||||||||| |
|
|
| T |
30007776 |
tccaaacgataactcggtattgcctgcaaatgctgagctcttggtatagagagtccaaatttctcctccatattcaaattggaaggactaatattatgtg |
30007677 |
T |
|
| Q |
254 |
gaagttcccaattaaaggaatgcaccaattgagctacaacaaatctaacagtaaccaaacccaattgaatcccaggacaacgtctacgacctgaaccaaa |
353 |
Q |
| |
|
|||||||||| |||||| ||||||| |||||||||| ||| || |||| ||| |||||||||||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
30007676 |
gaagttcccagttaaagcaatgcacaaattgagctataaccaacttaacgataattaaacccaattgaattccaggacaacgcctacgaccagaaccaaa |
30007577 |
T |
|
| Q |
354 |
tggtatagattcaaattcttgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcattttctgaccaaacatttgaatct |
453 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
30007576 |
tggtatagattcaaactcatgtccttgataattcattttcttgtcaataaatctctctgggtaaaattcatcagcattttctgaccaaacgttacaatct |
30007477 |
T |
|
| Q |
454 |
ctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgaggaagtaataagg |
553 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| |
|
|
| T |
30007476 |
ctcccaatagcccatgcatttactataactcgagtctttttcgttataaaatatccatcaattgttatgctctctctacattcacgagggattaataagg |
30007377 |
T |
|
| Q |
554 |
gtccaacggggtaaagtcttaatgtctcatcaaccaccatatctaagtaattcaacttcttca |
616 |
Q |
| |
|
||||||| || ||||||||||| || |||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
30007376 |
gtccaacaggataaagtcttaaggtttcatcaacaaccatatctaagtaattaaacttcttca |
30007314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 127 - 620
Target Start/End: Complemental strand, 30001684 - 30001194
Alignment:
| Q |
127 |
tggacctattcaagcttctcatcacattccaaacgataactcggtattgcgtgcaagtgttgagcccttggtatagtgactccaaatttctcttccatat |
226 |
Q |
| |
|
|||| |||||||||||| ||||| |||||||||||||| |||||||||||||| || ||||| ||||||||||||| |||||||||||| ||||||| |
|
|
| T |
30001684 |
tggaactattcaagcttagcatca---tccaaacgataacttggtattgcgtgcaaatgctgagctcttggtatagtgagtccaaatttctcctccatat |
30001588 |
T |
|
| Q |
227 |
tcaaatcggaagggctaatattatgtggaagttcccaattaaaggaatgcaccaattgagctacaacaaatctaacagtaaccaaacccaattgaatccc |
326 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||| ||| || |||| |||| || |||||||||||| || |
|
|
| T |
30001587 |
tcaaattggaaggactaatattatgtggaagttcccagttaaagcaatgcacgaattgagctataaccaacttaaccgtaatcatacccaattgaattcc |
30001488 |
T |
|
| Q |
327 |
aggacaacgtctacgacctgaaccaaatggtatagattcaaattcttgtccttgataattcattttcttatcactaaatctctctggataaaactcatca |
426 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| || ||| ||||||||||||| ||||| || ||| |
|
|
| T |
30001487 |
aggacaacgtctacgaccagaaccaaatggtatagattcaaactcttgtccgagataattcatttttttctcaataaatctctctgggtaaaattcttca |
30001388 |
T |
|
| Q |
427 |
gcattttctgaccaaacatttgaatctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgcttt |
526 |
Q |
| |
|
||||||||||||||||||| | ||||||||| || |||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| | | |
|
|
| T |
30001387 |
gcattttctgaccaaacatcaggatctctcccaattgcccatgcatttactataactcgtgtcttttcttttatagaataatcatcaattgttatgttct |
30001288 |
T |
|
| Q |
527 |
ctctacattcacgaggaagtaataagggtccaacggggtaaagtcttaatgtctcatcaaccaccatatctaagtaattcaacttcttcaaatc |
620 |
Q |
| |
|
|||||||||||||||| | |||||| ||| |||| || ||||||||||| || ||||||||||||||||||| |||||| || ||||||||||| |
|
|
| T |
30001287 |
ctctacattcacgagggattaataaaggtgcaacaggataaagtcttaaggtttcatcaaccaccatatctaggtaattaaaattcttcaaatc |
30001194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 156 - 614
Target Start/End: Original strand, 30043224 - 30043682
Alignment:
| Q |
156 |
caaacgataactcggtattgcgtgcaagtgttgagcccttggtatagtgactccaaatttctcttccatattcaaatcggaagggctaatattatgtgga |
255 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| ||||||||||||| |||||||||||| ||||||||||||| ||| || ||||||||||||||| |
|
|
| T |
30043224 |
caaacgataactcggtattgcgtgcaaatgctgagctcttggtatagtgagtccaaatttctcctccatattcaaattggagggactaatattatgtgga |
30043323 |
T |
|
| Q |
256 |
agttcccaattaaaggaatgcaccaattgagctacaacaaatctaacagtaaccaaacccaattgaatcccaggacaacgtctacgacctgaaccaaatg |
355 |
Q |
| |
|
|||||||| ||||| |||| | |||||||||| ||| ||| ||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
30043324 |
agttcccagttaaaacaatggataaattgagctataaccaatttaacagtaattaaacccaattgaattccaggacaacgcctacgaccagaaccaaatg |
30043423 |
T |
|
| Q |
356 |
gtatagattcaaattcttgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcattttctgaccaaacatttgaatctct |
455 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||| || || |||||||||||| ||||| || | ||||||||||||||||||||| | |||||| |
|
|
| T |
30043424 |
gtatagattcaaactcttgtccaagataattcatttttttctctacaaatctctctgggtaaaattctttagcattttctgaccaaacattaggatctct |
30043523 |
T |
|
| Q |
456 |
ccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgaggaagtaataagggt |
555 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| |||||| |||||||||| | || ||| ||| |
|
|
| T |
30043524 |
ccctattgcccatgcatttactataagtcgtgtcttttcctttataaaataaccatcaattgttgtgctctctctagattcacgagggactagtaacggt |
30043623 |
T |
|
| Q |
556 |
ccaacggggtaaagtcttaatgtctcatcaaccaccatatctaagtaattcaacttctt |
614 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30043624 |
gctacggggtaaagtcttaaggtctcatcaaccaccatatctaaataattcaacttctt |
30043682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 154 - 616
Target Start/End: Complemental strand, 29995986 - 29995525
Alignment:
| Q |
154 |
tccaaacgataactcggtattgcgtgcaagtgttgagcccttggtatagtgactccaaatttctcttccatattcaaatcggaagggctaatattatgtg |
253 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||||||| ||||||||||||| ||||||||| || |||||||||||| |||| ||||||||||||| |
|
|
| T |
29995986 |
tccaaacgataacttggtattgcatgcaaatgttgagttcttggtatagtgagtccaaatttttcctccatattcaaactagaagaactaatattatgtg |
29995887 |
T |
|
| Q |
254 |
gaagttcccaattaaaggaatgcaccaattgagctacaacaaatctaacagtaaccaaacccaattgaatcccaggacaacgtctacgacctgaaccaaa |
353 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||| ||| || ||| |||| |||||||||||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
29995886 |
gaagttcccaattaaagcaatgcacaaattgagctataaccaacttaatcgtaattaaacccaattgaattccaggacaacgcctacgactagaaccaaa |
29995787 |
T |
|
| Q |
354 |
tggtatagattcaaattcttgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcattttctgaccaaacatttgaatct |
453 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| ||| || ||| ||||||||||||||||||| || || |||||||||||||||||||| | |||| |
|
|
| T |
29995786 |
tggtatagattcaaactcttgtccgagataattcagttt-ttctcaataaatctctctggataaaattcttcggcattttctgaccaaacattaggatct |
29995688 |
T |
|
| Q |
454 |
ctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgaggaagtaataagg |
553 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || |||| |||||| | |||||||| | || ||| | |
|
|
| T |
29995687 |
ctccctattgcccatgcatttactataagtcgtgtcttttcctttataaaataaccatcaattattgtgctctctctagactcacgagggactagtaatg |
29995588 |
T |
|
| Q |
554 |
gtccaacggggtaaagtcttaatgtctcatcaaccaccatatctaagtaattcaacttcttca |
616 |
Q |
| |
|
|| |||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29995587 |
gtgcaacagggtaaagtcttaaggtctcatcaaccaccatatctaaataattcaacttcttca |
29995525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 154 - 620
Target Start/End: Original strand, 30067739 - 30068205
Alignment:
| Q |
154 |
tccaaacgataactcggtattgcgtgcaagtgttgagcccttggtatagtgactccaaatttctcttccatattcaaatcggaagggctaatattatgtg |
253 |
Q |
| |
|
|||||||||||||| |||||||||||||| || ||||| ||||||||||||| |||||||||||| ||||||||||||| | | || ||||||||||||| |
|
|
| T |
30067739 |
tccaaacgataacttggtattgcgtgcaaatgctgagctcttggtatagtgagtccaaatttctcctccatattcaaattgaatggactaatattatgtg |
30067838 |
T |
|
| Q |
254 |
gaagttcccaattaaaggaatgcaccaattgagctacaacaaatctaacagtaaccaaacccaattgaatcccaggacaacgtctacgacctgaaccaaa |
353 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||| ||| || |||||||| |||||||||||||| ||||| |||||||||||||| || |||| |
|
|
| T |
30067839 |
aaagttcccaattaaagcaatgcacaaattgagctataaccaacttaacagtagttaaacccaattgaattccagggcaacgtctacgaccataatcaaa |
30067938 |
T |
|
| Q |
354 |
tggtatagattcaaattcttgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcattttctgaccaaacatttgaatct |
453 |
Q |
| |
|
||||| | |||||| ||||||| |||||||||||||||||| ||| ||||||||| ||||||||| || ||||||||||||||||||||||| | |||| |
|
|
| T |
30067939 |
tggtaaactttcaaactcttgtctttgataattcattttcttttcaataaatctctttggataaaattcttcagcattttctgaccaaacattaggatct |
30068038 |
T |
|
| Q |
454 |
ctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgaggaagtaataagg |
553 |
Q |
| |
|
|||||||| |||||||||||||| |||| || |||||||||||||||||||| |||||||||||||| | |||||||||| | |||| | || ||||| |
|
|
| T |
30068039 |
ctccctattgcccatgcatttaccataattctcgtcttttcctttataaaataatcatcaattgttatgttctctctacatttaggagggactagtaagg |
30068138 |
T |
|
| Q |
554 |
gtccaacggggtaaagtcttaatgtctcatcaaccaccatatctaagtaattcaacttcttcaaatc |
620 |
Q |
| |
|
|| |||| || || |||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30068139 |
gtgcaacaggatacagtcttaaggtttcatcaaccaccatatctaagtaattcaacttcttcaaatc |
30068205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 161 - 613
Target Start/End: Complemental strand, 29947261 - 29946808
Alignment:
| Q |
161 |
gataactcggtattgcgtgcaagtgttgagcccttggtatag--tgactccaaatttctcttccatattcaaatcggaagggctaatattatgtggaagt |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||| || ||||||||| ||||||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
29947261 |
gataactcggtattgcgtgcaagtgttgagcccttggaatagagtga-tctaaatttctcctccatattcaaattggaaggactaatattacatggaagt |
29947163 |
T |
|
| Q |
259 |
tcccaattaaaggaatgcaccaattgagctacaacaaatctaacagtaaccaaacccaattgaatcccaggacaacgtctacgacctgaaccaaatggta |
358 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| ||| | | ||| || | |||||||| || ||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
29947162 |
tcccaattaaagcaatgtaccaattgagctataaccattttaattgtgatcaaacccatttcaattccaggacaacgtctacgaccagaaccaaatggta |
29947063 |
T |
|
| Q |
359 |
tagattcaaattcttgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcattttctgaccaaacatttgaatctctccc |
458 |
Q |
| |
|
|||||| ||| | ||||||| ||||||||||||| | ||| ||||||| ||||||| ||| || ||| |||||||||||||||| | ||||||||| | |
|
|
| T |
29947062 |
tagatttaaacttatgtccttcataattcattttcatgtcaataaatctttctggatgaaattcttcataattttctgaccaaacactagaatctctctc |
29946963 |
T |
|
| Q |
459 |
tatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgaggaagtaataagggtcca |
558 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||| || |
|
|
| T |
29946962 |
tatagcccatgcatttactataactcgtgtcttttccattataaaatatccatcaattgttatactctctctacattcacgagggagtaacaagggtgca |
29946863 |
T |
|
| Q |
559 |
acggggtaaagtcttaatgtctcatcaaccaccatatctaagtaattcaacttct |
613 |
Q |
| |
|
|| |||||||||||||| || |||| ||||||||||||||||||| | ||||||| |
|
|
| T |
29946862 |
acagggtaaagtcttaaagtttcatgaaccaccatatctaagtaacttaacttct |
29946808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 76 - 620
Target Start/End: Complemental strand, 29945376 - 29944829
Alignment:
| Q |
76 |
catctttaccagtaataaacttgttgaatacaagcataataatgtcctttatggaccta---ttcaagcttctcatcacattccaaacgataactcggta |
172 |
Q |
| |
|
||||||||| |||||||| |||||||||| ||| ||||||| ||||| | |||| ||| ||||||||| |||||| | ||||||||||||| |||| |
|
|
| T |
29945376 |
catctttactagtaataaccttgttgaatgcaaacataatattgtccctcttggaactactattcaagcttgccatcacctgccaaacgataacttggta |
29945277 |
T |
|
| Q |
173 |
ttgcgtgcaagtgttgagcccttggtatagtgactccaaatttctcttccatattcaaatcggaagggctaatattatgtggaagttcccaattaaagga |
272 |
Q |
| |
|
||||||| ||||||||||| || |||||| |||||||||||| ||||| ||||||| ||||| |||||||||| |||||||| |||||||||| | |
|
|
| T |
29945276 |
ttgcgtgtaagtgttgagctctatgtatagattgtccaaatttctcatccatgttcaaattagaaggactaatattatatggaagtttccaattaaagca |
29945177 |
T |
|
| Q |
273 |
atgcaccaattgagctacaacaaatctaacagtaaccaaacccaattgaatcccaggacaacgtctacgacctgaaccaaatggtatagattcaaattct |
372 |
Q |
| |
|
||||||||||||||||| || |||||||| |||| |||||||||| ||||| ||||| |||||||| | |||||||||||| |||||| ||| |
|
|
| T |
29945176 |
atgcaccaattgagctatgcttaacctaacagtcctcaaagccaattgaattccagggcaacgcctacgaccaaatccaaatggtatactttcaaactct |
29945077 |
T |
|
| Q |
373 |
tgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcattttctgaccaaacatttgaatctctccctatagcccatgcat |
472 |
Q |
| |
|
||||||| |||||||| |||||||| | |||| ||||||||| |||| || ||||||||||||||||||||||| | ||||||| |||| | |||||| |
|
|
| T |
29945076 |
tgtccttcataattcaatttcttattaataaacctctctggacaaaattcttcagcattttctgaccaaacattaggatctctcgctattgtaaatgcat |
29944977 |
T |
|
| Q |
473 |
ttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgaggaagtaataagggtccaacggggtaaagtct |
572 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||||||||| ||||| |||||| ||| || | |||||| |
|
|
| T |
29944976 |
ttactataactcgtgtcttttcctttacaaaataaccatcaattgttatgttctctctacattcacgagggagtaagaagggtgaaactggatgaagtct |
29944877 |
T |
|
| Q |
573 |
taatgtctcatcaaccaccatatctaagtaattcaacttcttcaaatc |
620 |
Q |
| |
|
||| || |||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
29944876 |
taaagtttcatcaaccaccatatctaagtaattaaaattcttcaaatc |
29944829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 402 - 493
Target Start/End: Complemental strand, 31890703 - 31890612
Alignment:
| Q |
402 |
aaatctctctggataaaactcatcagcattttctgaccaaacatttgaatctctccctatagcccatgcatttactataactcgtgtctttt |
493 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||||||||||| | ||||||||||| | ||||||||||| || || || |||||||| |
|
|
| T |
31890703 |
aaatctctctggataaaacgtctcagcattatccgaccaaacattagtgtctctccctattgtccatgcatttattaaaattcttgtctttt |
31890612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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