View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4758-Insertion-9 (Length: 531)
Name: NF4758-Insertion-9
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4758-Insertion-9 |
 | |
|
| [»] chr5 (6 HSPs) |
| |
|
| [»] scaffold0406 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 7 - 531
Target Start/End: Complemental strand, 5664256 - 5663730
Alignment:
| Q |
7 |
actaatgagcaagaatgaccattattggaagtcttcaacaagattgga--ggagaccgataacaaatattatgacaagagatgacacaaatttactatca |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5664256 |
actaatgagcaagaatgaccattattggaagtcttcaacaagattggaaaggagaccgataacaaatattatgacaagaagtgacacaaatttactatca |
5664157 |
T |
|
| Q |
105 |
cggtggaggtaacacttgataaattgatcaaccatgaaaagcaatgcatgacaagatgatatcaaaaatctatgattgagcaactacatactacattaat |
204 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5664156 |
cggtggaggtaacacttgtcaaattgatcaaccataaaaagcaatgcatgacaagatgatatcaaaaatctatgattgagcaactacatactacattaat |
5664057 |
T |
|
| Q |
205 |
ttggagtttttgaaatatgtatcaaggatgatttttgaaattgatacatatttttagaatattctagttaaaaaatgacaatgtctaatcagagaaacta |
304 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5664056 |
ttggagtttttgaaatgtgcatcaaggatgagttttgaaattgatacatatttttagaatattctagttaaaaaatgacaatgtctgatcagagaaacta |
5663957 |
T |
|
| Q |
305 |
gagtagcttaaagttgctacatgttttagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaa |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5663956 |
gagtagcttaaagttgctacatgttttagattgttctattaatgtctaaattaaattgtagcctagaaacatctataataatctaatgtagaaacggaaa |
5663857 |
T |
|
| Q |
405 |
acaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacatttaaatacaattacaa |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5663856 |
acaaaggcctagactcttctagttttagaaacatcttcaatcacttataaatagaattatatgggtgcgattgtatttaaacatttaaatacaattacaa |
5663757 |
T |
|
| Q |
505 |
tatattaagggcttccatatactatat |
531 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
5663756 |
tatattaagggcttccatatactatat |
5663730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 299 - 481
Target Start/End: Original strand, 5046332 - 5046515
Alignment:
| Q |
299 |
aaactagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaa |
397 |
Q |
| |
|
|||||||| || | |||||||||| ||||||| ||||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
5046332 |
aaactagaataacataaagttgcttcatgtttatagattgttttattaatgtctaggttaagttaaagcctagaaacatctataataatcttgtgtagat |
5046431 |
T |
|
| Q |
398 |
acggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt |
481 |
Q |
| |
|
| || ||||||||||||||| | |||||||||||||||||||| ||||||| |||||||||| ||||||| |||| |||||||| |
|
|
| T |
5046432 |
aaggcaaacaaaggcctagattattctagttttagaaacatctacaagcacctataaatagacttatatgagtgcaattgtatt |
5046515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 299 - 481
Target Start/End: Original strand, 5047103 - 5047286
Alignment:
| Q |
299 |
aaactagagtagcttaaagttgctacatgtttt-agattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaa |
397 |
Q |
| |
|
|||||||| || | |||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||| ||| ||||||||||||||| | |||| |
|
|
| T |
5047103 |
aaactagaataacataaagttgctacatgtttcgagattgttctattaatgtctaggttaagttaaagccttgaaccatctataataatcttgtctagat |
5047202 |
T |
|
| Q |
398 |
acggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt |
481 |
Q |
| |
|
| || ||||||||||||||| | |||||||||||||||||||| ||||||| |||||||| | ||||||| |||| |||||||| |
|
|
| T |
5047203 |
aaggcaaacaaaggcctagattattctagttttagaaacatctacaagcacctataaatatacttatatgagtgcaattgtatt |
5047286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 299 - 481
Target Start/End: Original strand, 5047874 - 5048057
Alignment:
| Q |
299 |
aaactagagtagcttaaagttgctacatgtttt-agattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaa |
397 |
Q |
| |
|
|||||||| || | |||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||| ||| ||||||||||||||| |||||| |
|
|
| T |
5047874 |
aaactagaataacataaagttgctacatgtttcgagattgttctattaatgtctaggttaagttaaagccttgaaccatctataataatcttgtgtagat |
5047973 |
T |
|
| Q |
398 |
acggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt |
481 |
Q |
| |
|
| || ||||||||||||||| | ||||||||||| |||||||| ||||||| |||||||| | ||||||| |||| |||||||| |
|
|
| T |
5047974 |
aaggcaaacaaaggcctagattattctagttttaaaaacatctacaagcacctataaatatacttatatgagtgcaattgtatt |
5048057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 77 - 245
Target Start/End: Original strand, 5047666 - 5047833
Alignment:
| Q |
77 |
gacaagagatgacacaaatttactatcacggtggaggtaacacttgataaattgatcaaccatgaaaag---caatgcatgacaagatgatatcaaaaat |
173 |
Q |
| |
|
|||||||| || || | |||| |||||| |||||||||||||| || |||||||||||| ||||| || ||||||| || |||||||| || |||| |
|
|
| T |
5047666 |
gacaagaggtgccaaatattttctatcatggtggaggtaacacctgtcaaattgatcaactatgaagagtatcaatgcaggaggagatgatagcacaaat |
5047765 |
T |
|
| Q |
174 |
ctatgattgagcaactacatactacattaatttggagtttttgaaatatgtatcaaggatgatttttgaaat |
245 |
Q |
| |
|
||||| |||| ||||||| |||||| ||||| |||||| |||||||| |||||||| || | ||||||| |
|
|
| T |
5047766 |
ctatgtttgaacaactacgtactac----atttgaagttttcgaaatatgcatcaaggaggagtgttgaaat |
5047833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 520
Target Start/End: Complemental strand, 5664895 - 5664811
Alignment:
| Q |
433 |
aaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacatttaaatacaattacaat-atattaagggcttcc |
520 |
Q |
| |
|
|||||||||||||||| |||| || |||||||||||| |||||||| || | |||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
5664895 |
aaacatcttcaagcacctata----gacttatatgggtgcaattgtattcaagcttttaaatacaatgacaataatattgagggcttcc |
5664811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 79 - 492
Target Start/End: Complemental strand, 1275629 - 1275221
Alignment:
| Q |
79 |
caagagatgacacaaatttactatcacggtggaggtaacacttgataaattgatcaaccatgaaaag---caatgcatgacaagatgatatcaaaaatct |
175 |
Q |
| |
|
|||||| | |||||||| |||||||| ||||||||||| ||||| ||||| |||||| ||||| || ||||| | || |||||||||||| |||||| |
|
|
| T |
1275629 |
caagaggtaacacaaatgtactatcatggtggaggtaagacttgtcaaattaatcaactatgaagagtatcaatgtaggaaaagatgatatcacaaatct |
1275530 |
T |
|
| Q |
176 |
atgattgagcaactacatactacattaatttggagtttttgaaatatgtatcaaggatgatttttgaaattgatacatatttttagaatattctagttaa |
275 |
Q |
| |
|
||| |||||||||||| | |||||| |||||||| ||||||||| |||||||| || | ||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
1275529 |
atgtttgagcaactacgcattacatt----tggagtttctgaaatatgcatcaaggaggagtgttgaaattgatacatatttctagaattttctagttaa |
1275434 |
T |
|
| Q |
276 |
aaaatgacaatgtctaatcagagaaa-ctagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaa |
373 |
Q |
| |
|
| | || | ||||| | ||||||| ||||| || || ||||||||||||||||| |||||| || ||||||||| |||||||| ||||||| |||||| |
|
|
| T |
1275433 |
tata--acgacgtctatt-agagaaaactagaataactcaaagttgctacatgtttctagattattttattaatgtataaattaagttatagcttagaaa |
1275337 |
T |
|
| Q |
374 |
catctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcg |
473 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||| ||||||| |||||||| |||||||||| ||||| || | ||||||||||| |
|
|
| T |
1275336 |
catctataataatctaatgtagaaatggcaaacaaaggcctaga---atctagttctagaaacaccttcaagcacctataagtataggtatatgggtgca |
1275240 |
T |
|
| Q |
474 |
attgtatttaaacatttaa |
492 |
Q |
| |
|
|||||||| |||| ||||| |
|
|
| T |
1275239 |
attgtattcaaacgtttaa |
1275221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 66 - 459
Target Start/End: Complemental strand, 22055904 - 22055518
Alignment:
| Q |
66 |
acaaatattatgacaagagatgacacaaatttactatcacggtggaggtaacacttgataaattgatcaaccatgaaaag---caatgcatgacaagatg |
162 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||||||||| ||| ||||||||||||| |||||||||||| |||||||| |||||||||| ||||| |
|
|
| T |
22055904 |
acaagtattatggcaagatgtgacacaaatttactatcatggtagaggtaacacttgtaaaattgatcaactatgaaaagtatcaatgcatgaggagatg |
22055805 |
T |
|
| Q |
163 |
atatcaaaaatctatgattgagcaactacatactacattaatttggagtttttgaaatatgtatcaaggatgatttttgaaattgatacatatttttaga |
262 |
Q |
| |
|
|||||| || |||||| |||| ||||| ||| ||||||||| |||| || || ||||| || | ||||||||||||||||| | || | |
|
|
| T |
22055804 |
atatca--------tgtttgagctactatgtactagatt----tggagttttcgaaacatacattaaggaggagtgttgaaattgatacatatctctaaa |
22055717 |
T |
|
| Q |
263 |
atattctagttaaaaa-atgacaatgtctaatcagagaaa-ctagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaa |
359 |
Q |
| |
|
||| | |||||||||| ||||||||||||| | ||||||| ||| | ||||||||| |||||| |||||| |||||||||| ||||||||||| |||||| |
|
|
| T |
22055716 |
ataatatagttaaaaatatgacaatgtctatt-agagaaaactataatagcttaaatttgctaaatgtttctagattgttcaattaatgtctagattaaa |
22055618 |
T |
|
| Q |
360 |
ttatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaataga |
459 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||| || |||||||| |||||| | || ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
22055617 |
ttgtagcctagaaacatctataataatctaatgtataaaaggcaaacaaagacctagattattttagttctagaatcatcttcaagcacttataaataga |
22055518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 237 - 455
Target Start/End: Complemental strand, 22056817 - 22056597
Alignment:
| Q |
237 |
ttttgaaattgatacatatttttagaatattctagttaaaaaatgacaatgtctaatcagagaaa-ctagagtagctt-aaagttgctacatgttt-tag |
333 |
Q |
| |
|
||||||||||||||||||||| | | || ||||||||||| ||| || |||||| | ||||||| ||| | |||||| |||||| || ||| ||| ||| |
|
|
| T |
22056817 |
ttttgaaattgatacatatttccaaagtaatctagttaaaatatgccagtgtctatt-agagaaaactataatagctttaaagttacttcatatttctag |
22056719 |
T |
|
| Q |
334 |
attgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttaga |
433 |
Q |
| |
|
|||||||| |||||||||| ||||| || ||||||| |||||||||| ||||||||||||||||| || ||||||| ||||||| | |||||||| |||| |
|
|
| T |
22056718 |
attgttctgttaatgtctagattaatttgtagcctaaaaacatctatgataatctaatgtagaaaaggcaaacaaatgcctagattattctagttctaga |
22056619 |
T |
|
| Q |
434 |
aacatcttcaagcacttataaa |
455 |
Q |
| |
|
|| |||||||||||| |||||| |
|
|
| T |
22056618 |
aatatcttcaagcacctataaa |
22056597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 380 - 472
Target Start/End: Original strand, 29371869 - 29371961
Alignment:
| Q |
380 |
taataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgc |
472 |
Q |
| |
|
||||||| |||||| |||| || ||||||| | ||||| | ||| ||| ||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29371869 |
taataatgtaatgtggaaaaggcaaacaaaagtctagattattcaagtattataaacatcttcaagcacttataaatagatttatatgggtgc |
29371961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 369
Target Start/End: Original strand, 29372954 - 29373123
Alignment:
| Q |
200 |
ttaatttggagtttttgaaatatgtatcaaggatgatttttgaaattgatacatatttttagaatattctagttaaaaa-atgacaatgtctaatcagag |
298 |
Q |
| |
|
||||||||||||||| || ||||| || ||||| || ||||| |||||||| ||| ||||||| | |||||||||| ||||||||||||| | |||| |
|
|
| T |
29372954 |
ttaatttggagttttcgacatatgcattaaggaggagagttgaa--tgatacatgtttctagaataatttagttaaaaatatgacaatgtctatt-agag |
29373050 |
T |
|
| Q |
299 |
aaac-tagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagccta |
369 |
Q |
| |
|
|| |||| ||| ||||||||||||||||||| |||||||||||| |||| |||| ||||| || ||||||| |
|
|
| T |
29373051 |
aattatagaatagtttaaagttgctacatgtttctagattgttctactaatatctagattaagttgtagccta |
29373123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 9e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 239 - 481
Target Start/End: Complemental strand, 22622650 - 22622406
Alignment:
| Q |
239 |
ttgaaattgatacatatttttagaatattctagttaaaa-aatgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgttt-tagatt |
336 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| | | |||||| | |||||||||||||| |||||||| |||||| |
|
|
| T |
22622650 |
ttgaaattgatacatatttctagaatattctagttaaaataatgataatgtctattagaaaaaactataatagcttaaagttgccacatgtttctagatt |
22622551 |
T |
|
| Q |
337 |
gttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaac |
436 |
Q |
| |
|
||||||||||| |||| |||||||| ||||||| ||||||||| |||| ||||||||||||| || |||||||| |||||| | ||||| || ||||||| |
|
|
| T |
22622550 |
gttctattaatatctagattaaattgtagcctaaaaacatctacaatattctaatgtagaaaaggcaaacaaagacctagattattctaattctagaaac |
22622451 |
T |
|
| Q |
437 |
atcttcaagcacttataaatagaattatatgggtgcgattgtatt |
481 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||| |||||||| |
|
|
| T |
22622450 |
atcttcaggcacttataaataggcttatatgggtgcaattgtatt |
22622406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 57 - 481
Target Start/End: Original strand, 5936 - 6347
Alignment:
| Q |
57 |
agaccgataacaaatattatgacaagagatgacacaaatttactatcacggtggaggtaacacttgataaattgatcaaccatgaaaag---caatgcat |
153 |
Q |
| |
|
||||| ||||||||||||||| ||| ||||| ||||||||| |||||| |||||||||||||| || |||||||||||| | ||| || ||||||| |
|
|
| T |
5936 |
agaccaataacaaatattatggcaatagatgtcacaaattttctatcatggtggaggtaacacctgtcaaattgatcaactacgaagagtttcaatgcag |
6035 |
T |
|
| Q |
154 |
gacaagatgatatcaaaaatctatgattgagcaactacatactacattaatttggagtttttgaaatatgtatcaaggatgatttttgaaat-tgataca |
252 |
Q |
| |
|
|| ||||||| || ||||||||| ||||||||||| ||||||||| || |||||| |||||||| |||||||| || | ||||||| |||| || |
|
|
| T |
6036 |
gaggggatgatagcacaaatctatgtttgagcaactaagtactacatt----tgaagttttcgaaatatgcatcaaggaggagtgttgaaatatgatgca |
6131 |
T |
|
| Q |
253 |
tatttttagaatattctagttaaaaaatgacaatgtctaatcagagaaa-ctagagtagcttaaagttgctacatgtttt-agattgttctattaatgtc |
350 |
Q |
| |
|
|||| |||| |||||| ||| ||| | ||||||| ||||| || | |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6132 |
catttctagatatttctag------aat-acatt--------agagaaaactagaataacataaagttgctacatgtttcgagattgttctattaatgtc |
6216 |
T |
|
| Q |
351 |
taaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcactt |
450 |
Q |
| |
|
|| |||| ||| ||||||||||||||||||||||||| || ||| | || ||||||||||||||| | |||||||| |||||||| |||||||||| | |
|
|
| T |
6217 |
taggttaagttaaagcctagaaacatctataataatcttgtgcagataaggcaaacaaaggcctagattattctagttctagaaacagcttcaagcacct |
6316 |
T |
|
| Q |
451 |
ataaatagaattatatgggtgcgattgtatt |
481 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |
|
|
| T |
6317 |
ataaatagacttatatgggtgaaattgtatt |
6347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 239 - 481
Target Start/End: Original strand, 28786834 - 28787075
Alignment:
| Q |
239 |
ttgaaattgatacatatttttagaatattctagttaaaa-aatgacaatgtctaatcagagaaa-ctagagtagcttaaagttgctacatgttt-tagat |
335 |
Q |
| |
|
|||||||||||| |||||| || ||||||||||||||| ||||||||| | || ||||||| ||||| || |||||||||||||||||||| || || |
|
|
| T |
28786834 |
ttgaaattgatatatatttctaaaatattctagttaaattaatgacaatttt--attagagaaaactagaataacttaaagttgctacatgtttctaaat |
28786931 |
T |
|
| Q |
336 |
tgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaa |
435 |
Q |
| |
|
|||| ||||||||||| ||||| || ||||||||||||||||||||| |||| ||||||||| |||| ||||||||||| | | | ||||| |||||| |
|
|
| T |
28786932 |
tgttatattaatgtctcgattaagttgtagcctagaaacatctataattatcttatgtagaaaaggaatacaaaggcctaaattat--tagttctagaaa |
28787029 |
T |
|
| Q |
436 |
catcttcaagcacttataaatagaattatatgggtgcgattgtatt |
481 |
Q |
| |
|
||||||||||||| |||||||||| ||||| ||||| |||||||| |
|
|
| T |
28787030 |
catcttcaagcacctataaatagacatatattggtgcaattgtatt |
28787075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 314 - 481
Target Start/End: Original strand, 51246521 - 51246689
Alignment:
| Q |
314 |
aaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggc |
412 |
Q |
| |
|
|||||||||| |||||| ||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||||| |||||| | || |||||||||| |
|
|
| T |
51246521 |
aaagttgctagatgtttctagattgctctattaatgtctaggttaagttaaagcctagaaacatctataataatcttgtgtagataaggcaaacaaaggc |
51246620 |
T |
|
| Q |
413 |
ctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt |
481 |
Q |
| |
|
||||| | |||||||| ||||||||||| ||||||| ||||| |||| |||||||||||| |||||||| |
|
|
| T |
51246621 |
ctagattattctagttctagaaacatctacaagcacctataagtagacttatatgggtgcaattgtatt |
51246689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 299 - 481
Target Start/End: Original strand, 24853230 - 24853413
Alignment:
| Q |
299 |
aaactagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaa |
397 |
Q |
| |
|
|||||||| || | ||||||| ||| |||||| ||||||||||||||||| | |||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24853230 |
aaactagaataacataaagtttctaaatgtttctagattgttctattaatatataaattaagttatagccaagaaacatctataataatctaatgtagaa |
24853329 |
T |
|
| Q |
398 |
acggaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt |
481 |
Q |
| |
|
| || ||||||||||||| | | |||||||| || |||||||||| | ||| |||||||||| |||| ||| ||| |||||||| |
|
|
| T |
24853330 |
aaggcaaacaaaggcctaaattattctagttctaaaaacatcttctaacacctataaatagacttatttggatgcaattgtatt |
24853413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 313 - 481
Target Start/End: Complemental strand, 17525691 - 17525522
Alignment:
| Q |
313 |
taaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaagg |
411 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||||||| |||| ||| ||||||||||||||||||||||||| |||||| | || ||||||||| |
|
|
| T |
17525691 |
taaagttgctacatgtttcttgattattctattaatgtctaggttaagttaaagcctagaaacatctataataatcttgtgtagataaggcaaacaaagg |
17525592 |
T |
|
| Q |
412 |
cctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt |
481 |
Q |
| |
|
|||||| | |||||||| ||||||||||| ||||| |||||||||||| ||||||| ||| |||||||| |
|
|
| T |
17525591 |
cctagattattctagttctagaaacatctacaagcgcttataaatagacttatatgtgtgaaattgtatt |
17525522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 341 - 481
Target Start/End: Original strand, 28787887 - 28788027
Alignment:
| Q |
341 |
tattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagactcttctagttttagaaacatct |
440 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||| ||||||||| |||||||||| ||| |||||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
28787887 |
tattattgtctcgattaagttgtagcctagaaatatctataattatctaatgtacaaaaggaaaacaaaggcctagattattctagttctagaaacatct |
28787986 |
T |
|
| Q |
441 |
tcaagcacttataaatagaattatatgggtgcgattgtatt |
481 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
28787987 |
tcaaacacctataaatagacatatatgggtgcaattgtatt |
28788027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 54 - 286
Target Start/End: Original strand, 28787655 - 28787883
Alignment:
| Q |
54 |
aggagaccgataacaaatattatgacaagagatgacacaaatttactatcacggtggaggtaacacttgataaattgatcaaccatgaaaag---caatg |
150 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| ||||||||||||||| | | ||||| ||||||| || |||||||||||| ||||| || ||||| |
|
|
| T |
28787655 |
aggagaccaataacaaatattatggcaagaggtgacacaaatttactgttatagtggatgtaacacctgtcaaattgatcaactatgaagagtatcaatg |
28787754 |
T |
|
| Q |
151 |
catgacaagatgatatcaaaaatctatgattgagcaactacatactacattaatttggagtttttgaaatatgtatcaaggatgatttttgaaattgata |
250 |
Q |
| |
|
|| || |||||||||| ||||||||| | ||||||||| ||||||| | |||||||||||||| ||| |||||||| || | |||||||||||| |
|
|
| T |
28787755 |
cagga---gatgatatcacaaatctatgttcgagcaactaggtactacaat----tggagtttttgaaa-atgcatcaaggaggagtgttgaaattgata |
28787846 |
T |
|
| Q |
251 |
catatttttagaatattctagttaaaa-aatgacaat |
286 |
Q |
| |
|
||||||| ||||| |||| |||||||| ||||||||| |
|
|
| T |
28787847 |
catatttctagaacattccagttaaaataatgacaat |
28787883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 54 - 232
Target Start/End: Complemental strand, 6824292 - 6824115
Alignment:
| Q |
54 |
aggagaccgataacaaatattatgacaagagatgacacaaatttactatcacggtggaggtaacacttgataaattgatcaaccatgaaaag---caatg |
150 |
Q |
| |
|
|||||| | ||||||||||||||| |||||| || |||||||| |||||| ||||||| |||||| || |||||||||||| ||||| || ||||| |
|
|
| T |
6824292 |
aggagatcaataacaaatattatggcaagaggtggcacaaattctctatcatggtggagctaacacctgtcaaattgatcaactatgaagagtttcaatg |
6824193 |
T |
|
| Q |
151 |
catgacaagatgatatcaaaaatctatgattgagcaactacatactacattaatttggagtttttgaaatatgtatcaagga |
232 |
Q |
| |
|
|| || |||||||| || ||||||||| |||||||||||| |||||| ||||| |||||| |||||||| |||||||| |
|
|
| T |
6824192 |
caggaggagatgataacacaaatctatgtttgagcaactacgtactac----atttgaagttttcgaaatatgcatcaagga |
6824115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 481
Target Start/End: Original strand, 24856133 - 24856304
Alignment:
| Q |
302 |
ctagagtagcttaaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacg |
400 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||||||||||||||||| |||| ||| |||||| ||||| ||| |||||||| || | |
|
|
| T |
24856133 |
ctagaataacttaaagttgctacatgtttctagattgttctattaatgtctagtttaagttaaagcctataaaca-----aat----taatgtaggaaag |
24856223 |
T |
|
| Q |
401 |
gaaaacaaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt |
481 |
Q |
| |
|
| ||||||||||||||| | |||||||| ||||||||| ||| | ||| |||||||||| |||| || ||| |||||||| |
|
|
| T |
24856224 |
gcaaacaaaggcctagattattctagttctagaaacattttctaacacctataaatagacttattaggatgcaattgtatt |
24856304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 34 - 245
Target Start/End: Complemental strand, 17525951 - 17525746
Alignment:
| Q |
34 |
gaagtcttcaacaagat-tggaggagaccgataacaaatattatgacaagagatgacacaaatttactatcacggtggaggtaacacttgataaattgat |
132 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||| |||||| || ||||||||| |||||| |||||||| || |||||||| |
|
|
| T |
17525951 |
gaagtcttcaacaagatcacaaggagaccaataacaaatattatggcaagaggtggcacaaatttcctatca------tggtaacacctgtcaaattgat |
17525858 |
T |
|
| Q |
133 |
caaccatgaaaag---caatgcatgacaagatgatatcaaaaatctatgattgagcaactacatactacattaatttggagtttttgaaatatgtatcaa |
229 |
Q |
| |
|
|||| ||||| || ||||||| || |||||||| | |||||||||| |||||||||||| |||||| ||||| |||||| |||||||| ||||| |
|
|
| T |
17525857 |
caactatgaagagtatcaatgcaagaggagatgatagcgaaaatctatgtttgagcaactacgtactac----atttgaagttttcgaaatatgcatcaa |
17525762 |
T |
|
| Q |
230 |
ggatgatttttgaaat |
245 |
Q |
| |
|
||| || | ||||||| |
|
|
| T |
17525761 |
ggaggagtgttgaaat |
17525746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 313 - 481
Target Start/End: Original strand, 12739240 - 12739409
Alignment:
| Q |
313 |
taaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaagg |
411 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||| |||||||| || ||||||| | |
|
|
| T |
12739240 |
taaagttgctacatgtttctagattgttctattaatatctaggttaagttacagcctagaaacatctataataatcttgtgtagaaaaggcaaacaaaag |
12739339 |
T |
|
| Q |
412 |
cctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt |
481 |
Q |
| |
|
|||||| | || ||||| ||||||||||| |||||| ||||||||||||||| ||| ||| |||||||| |
|
|
| T |
12739340 |
cctagattattttagttctagaaacatctacaagcatctataaatagaattatttggatgcaattgtatt |
12739409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 313 - 481
Target Start/End: Original strand, 12738089 - 12738258
Alignment:
| Q |
313 |
taaagttgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaagg |
411 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||| ||||| |||| |||||||| || ||||||| | |
|
|
| T |
12738089 |
taaagttgctacatgtttgtagattgttctattaatgtctagattaaggtaaagcctagaaacatcaataattatcttgtgtagaaaaggcaaacaaaag |
12738188 |
T |
|
| Q |
412 |
cctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt |
481 |
Q |
| |
|
|||||| || ||||| ||||||||||| ||||||| |||||||| | |||| ||||||| |||||||| |
|
|
| T |
12738189 |
cctagataattttagttctagaaacatctacaagcacctataaataaacttatttgggtgcaattgtatt |
12738258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 239 - 380
Target Start/End: Original strand, 1896723 - 1896865
Alignment:
| Q |
239 |
ttgaaattgatacatatttttagaatattctag-ttaaaaaatgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgttt-tagatt |
336 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||| ||||||||||||||||||| || ||| |||||||| |||||||||||||| |||||||| || ||| |
|
|
| T |
1896723 |
ttgaaatagataaatatttctagaatattctagtttaaaaaatgacaatgtct-attagaaaaactagaatagcttaaagttgccacatgtttatatatt |
1896821 |
T |
|
| Q |
337 |
gttctattaatgtctaaattaaattatagcctagaaacatctat |
380 |
Q |
| |
|
|||||||| ||| ||| |||| || |||||||||||||||||| |
|
|
| T |
1896822 |
gttctattgatgactaggttaagttgtagcctagaaacatctat |
1896865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 239 - 380
Target Start/End: Original strand, 1906169 - 1906311
Alignment:
| Q |
239 |
ttgaaattgatacatatttttagaatattctag-ttaaaaaatgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgttt-tagatt |
336 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||| ||||||||||||||||||| || ||| |||||||| |||||||||||||| |||||||| || ||| |
|
|
| T |
1906169 |
ttgaaatagataaatatttctagaatattctagtttaaaaaatgacaatgtct-attagaaaaactagaatagcttaaagttgccacatgtttatatatt |
1906267 |
T |
|
| Q |
337 |
gttctattaatgtctaaattaaattatagcctagaaacatctat |
380 |
Q |
| |
|
|||||||| ||| ||| |||| || |||||||||||||||||| |
|
|
| T |
1906268 |
gttctattgatgactaggttaagttgtagcctagaaacatctat |
1906311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 2932913 - 2932818
Alignment:
| Q |
238 |
tttgaaattgatacatatttttagaatattctagttaa--aaaatgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgtttt |
331 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | | |||||||| ||||||||||||||||||| |||| |
|
|
| T |
2932913 |
tttgaaattgatacatatttctagaatattctagttaaaaaaaatgacaatgtctattagaaaaaactagaatagcttaaagttgctacatatttt |
2932818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 319 - 458
Target Start/End: Original strand, 15022963 - 15023103
Alignment:
| Q |
319 |
tgctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctaga |
417 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| || || | ||| || ||| |||||||||||||||||| |||||| | || ||||||| ||||||| |
|
|
| T |
15022963 |
tgctatatgtttctagattgttctattaatgtttaggttcagttaaagtctaaaaacatctataataatcttgtgtagataaggcaaacaaatgcctaga |
15023062 |
T |
|
| Q |
418 |
ctcttctagttttagaaacatcttcaagcacttataaatag |
458 |
Q |
| |
|
| || ||||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
15023063 |
ttattttagttctagaaacatctacaagcacctataaatag |
15023103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 243 - 330
Target Start/End: Original strand, 1888660 - 1888748
Alignment:
| Q |
243 |
aattgatacatatttttagaatattctagtt-aaaaaatgacaatgtctaatcagagaaactagagtagcttaaagttgctacatgttt |
330 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |||||||||||||||||| | | |||| ||| ||||| ||||||||||||||||| |
|
|
| T |
1888660 |
aattgatgcatatttctagaatattctagttaaaaaaatgacaatgtctattagaaaaaacaagaatagctaaaagttgctacatgttt |
1888748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 12737463 - 12737509
Alignment:
| Q |
313 |
taaagttgctacatgttt-tagattgttctattaatgtctaaattaa |
358 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
12737463 |
taaagttgctacatgtttgtagattgttctattaatgtctagattaa |
12737509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 321 - 481
Target Start/End: Complemental strand, 20979034 - 20978872
Alignment:
| Q |
321 |
ctacatgttt-tagattgttctattaatgtctaaattaaattatagcctagaaacatctataataatctaatgtagaaacggaaaacaaaggcctagact |
419 |
Q |
| |
|
|||||||||| |||||||||||||| |||| || |||| ||| ||||||||||||||||||||||| | |||||| | || ||||||||| |||| | |
|
|
| T |
20979034 |
ctacatgtttctagattgttctattcatgtttaggttaagttaaagcctagaaacatctataataatattgtgtagataaggcaaacaaaggtatagatt |
20978935 |
T |
|
| Q |
420 |
cttctagttttagaaacatcttc-aagcacttataaatagaattatatgggtgcgattgtatt |
481 |
Q |
| |
|
|||||||| ||||||||||| | ||| || |||||||| | |||||||||||| ||| |||| |
|
|
| T |
20978934 |
attctagttctagaaacatctacaaagtacctataaataaacttatatgggtgccattatatt |
20978872 |
T |
|
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