View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4758_high_2 (Length: 380)
Name: NF4758_high_2
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4758_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 30506532 - 30506180
Alignment:
| Q |
18 |
agcatgggcacaaatatgatgcctttgatc-------agtatcttagatgggaataatgttacaaataaaagtgttcctctcacttcggtcttcaacaaa |
110 |
Q |
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| T |
30506532 |
agcatgggcacaaatatgatgcctttgacactactaaagtattttagatgggaataatgttacaaataaaagtgttcctctcacttcagtcttcaacaaa |
30506433 |
T |
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| Q |
111 |
atctctcttacttgccaaccattttccctcctaactagagtatataggttattaacttattttgattatttttgcaatatatat---tgtaatgctggct |
207 |
Q |
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| T |
30506432 |
atctctcttacttgccaaccattttccctcctaactagagtatataggttattaacttattttgattatttttgcaatatatatatatgtaatgctgcct |
30506333 |
T |
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| Q |
208 |
cagtattaatatataatttgttcgtatccttttcaattcggggcctcttaataattatatatccttcgatttaatcctctatatagcttgtccaccactt |
307 |
Q |
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| T |
30506332 |
cagtattaatatatactttgttcataaccttttcaattcttggcctcttaataattatatatcc----------tcctc--tatagcttgtccaccactt |
30506245 |
T |
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| Q |
308 |
gaatcaaggattgaaaggagcaccttgaaaatgtgaaattacttgagcattgctagacctatgtt |
372 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30506244 |
gaatcaagggttaaaaggagcaccttgaaaatgtgaaattacttgagcattgctagacctatgtt |
30506180 |
T |
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