View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4758_high_3 (Length: 338)
Name: NF4758_high_3
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4758_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 12558148 - 12558478
Alignment:
| Q |
1 |
tgagtacttgctgattataaccagatttatatatttggaagaattcttcagtgaaaggatcaccgacagccttaaaactcttcagctcctgtaacgtctt |
100 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12558148 |
tgagtacttgctgattataaacagattgatatatttggaagaattcttcagtgaaaggatcaccgacagccttaaaactcttcagctcctgtaacgtctt |
12558247 |
T |
|
| Q |
101 |
cacgtagcaattgtctcccgacacagtttcctcatcaaacttttgaagagctacatcaataagcaattgactatccctggctctcttcagacacttctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12558248 |
cacgtagcaattgtctcccgacacagtttcctcatcaaacttttgaagagctacatcaataagcaattgactatccctggctctcttcagacacttctct |
12558347 |
T |
|
| Q |
201 |
aaagcattgcagaaatctagagtcttcaagctattatcaaagtactcctcaacaagctcaaacagttcttgactcttccatatatctttcttacagtcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12558348 |
aaagcattgcagaaatctagagtcttcaagctattatcaaagtactcctcaacaagctcaaacagttcttgactcttccatatatctttcttacagtcta |
12558447 |
T |
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| Q |
301 |
agattaccttcacaacttcctgattcatctc |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
12558448 |
agattaccttcacaacttcctgattcatctc |
12558478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 158 - 332
Target Start/End: Original strand, 25997358 - 25997532
Alignment:
| Q |
158 |
aataagcaattgactatccctggctctcttcagacacttctctaaagcattgcagaaatctagagtcttcaagctattatcaaagtactcctcaacaagc |
257 |
Q |
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|||||||||||| |||||||| ||||| |||| |||||||| || ||| |||||||||| | || | ||| || || ||||| || || ||||| ||| |
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| T |
25997358 |
aataagcaattggctatccctagctcttttcaagcacttctccaatgcagtgcagaaatccaatgtttgcaaactgttttcaaaatattcttcaaccagc |
25997457 |
T |
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| Q |
258 |
tcaaacagttcttgactcttccatatatctttcttacagtctaagattaccttcacaacttcctgattcatctca |
332 |
Q |
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|||||||| ||||| || |||||||| |||||||| || || |||||||| ||||||||||| |||||||||||| |
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| T |
25997458 |
tcaaacagatcttggctgttccatatgtctttcttgcaatccaagattactttcacaacttcttgattcatctca |
25997532 |
T |
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