View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4758_low_1 (Length: 685)
Name: NF4758_low_1
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4758_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 30991264 - 30991524
Alignment:
| Q |
11 |
cacagacattgttgtttcagataatgttccagaacaagatcaaagtttact-----acgaaaccaaaccaaaccaaaccctcaaatttatatgacacagt |
105 |
Q |
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| T |
30991264 |
cacagacattgttgtttcagataatgttccagaacaagatcaaattttactatgaaaccaaaccaaaccaaaccaaaccctcaaatttatatgacacagt |
30991363 |
T |
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| Q |
106 |
tgttgaataataaatttgagacaaacccttttgctctttatatctttctcaaaacagataaattctcacacgtttatttgcaaaaagacaaagaagattt |
205 |
Q |
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| T |
30991364 |
tgttgaataataaatttgagacaaacccctttgctctttatatctttctcaaaacagataaattcacacacgtttatttgcaaaaagacaaagaagattt |
30991463 |
T |
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| Q |
206 |
atgaatgaaatgtcaaatattctacttcaggatgataaatgctaacctcttataatgttac |
266 |
Q |
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| T |
30991464 |
atgaatgaaatgtcaaatattctacttcaggatgataaatgctaacctcttataatgttac |
30991524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 417 - 609
Target Start/End: Original strand, 30991670 - 30991862
Alignment:
| Q |
417 |
gttgcgtccactggttgaataggcaagtggttgcaaaacagaagcgcgtggagtgcgtggtgttgnnnnnnnatgctgagctgtgaggatttagacaaca |
516 |
Q |
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| T |
30991670 |
gttgcgtccactggttgaataggcaagtggttgcaaaatagaagcgcgtggtgtgcgtggtgttgtttttttatgctgagctgtgaggatttagacaaca |
30991769 |
T |
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| Q |
517 |
aggtggattgagattgtgtagaaagaaatgatgaatattcaaaggaagaaaacagatgcaagatcaaaaagcggctggattgaaattgactag |
609 |
Q |
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| T |
30991770 |
aggtggattgagattgtgtagaaagaaatgatgaatattcaaaggaagaaaacaaatgcaaaatcaaaaagcggctggattgaaattgactag |
30991862 |
T |
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