View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4758_low_10 (Length: 240)

Name: NF4758_low_10
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4758_low_10
NF4758_low_10
[»] chr7 (3 HSPs)
chr7 (1-169)||(23860501-23860669)
chr7 (1-102)||(23864114-23864215)
chr7 (171-218)||(23859994-23860041)
[»] chr6 (4 HSPs)
chr6 (177-221)||(7938071-7938115)
chr6 (177-221)||(16766652-16766696)
chr6 (177-221)||(8777033-8777077)
chr6 (177-221)||(9107430-9107474)
[»] chr5 (1 HSPs)
chr5 (177-219)||(13287461-13287503)
[»] scaffold0116 (1 HSPs)
scaffold0116 (177-221)||(9853-9897)
[»] scaffold0053 (1 HSPs)
scaffold0053 (177-221)||(8753-8797)
[»] scaffold0027 (1 HSPs)
scaffold0027 (177-221)||(46637-46681)
[»] chr3 (2 HSPs)
chr3 (177-221)||(10268546-10268590)
chr3 (177-221)||(16000076-16000120)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 23860669 - 23860501
Alignment:
Q  1 tcaggatttcaagtttgtgaaagcacttattttctgtcattgtgtttttactgttgggatttcatttcataataagttttggtatgtagttttttccatg 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23860669 tcagaatttcaagtttgtgaaagcacttattttctgtcattgtgtttttactgttgggatttcatttcataataagttttggtatgtagttttttccatg 23860570  T
Q  101 aggaagaaatcaataatattgttgtcatttttcatatttcaatcaataaagaaaaggatttttgtcccg 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23860569 aggaagaaatcaataatattgttgtcatttttcatatttcaatcaataaagaaaaggatttttgtcccg 23860501  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 23864215 - 23864114
Alignment:
Q  1 tcaggatttcaagtttgtgaaagcacttattttctgtcattgtgtttttactgttgggatttcatttcataataagttttggtatgtagtt-ttttccat 99  Q
    |||| |||||||||||||||||| ||||||| ||||||||| |  ||||  |||| |||||||||||||||||| |||||||||||| ||| ||||||||    
T  23864215 tcagaatttcaagtttgtgaaagaacttattatctgtcatt-tagttttgttgtttggatttcatttcataatatgttttggtatgtggttcttttccat 23864117  T
Q  100 gag 102  Q
    |||    
T  23864116 gag 23864114  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 23860041 - 23859994
Alignment:
Q  171 aagtaaggatacggacacggacatcgaacacgacatggacactaacac 218  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  23860041 aagtaaggatacggacacggacatcgaacacgacatggatactgacac 23859994  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 7938071 - 7938115
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgcc 221  Q
    ||||||||||||||||| || |||||||||||||||| |||||||    
T  7938071 ggatacggacacggacaccggacacgacatggacactgacacgcc 7938115  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 16766652 - 16766696
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgcc 221  Q
    ||||||||||||||||| || |||||||||||||||| |||||||    
T  16766652 ggatacggacacggacaccggacacgacatggacactgacacgcc 16766696  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 8777077 - 8777033
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgcc 221  Q
    ||||||||||||||||| || |||||||| ||||||| |||||||    
T  8777077 ggatacggacacggacaacggacacgacacggacactgacacgcc 8777033  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 9107474 - 9107430
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgcc 221  Q
    |||||| |||||||||| || |||||||| |||||||||||||||    
T  9107474 ggatactgacacggacaccggacacgacacggacactaacacgcc 9107430  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 13287503 - 13287461
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacg 219  Q
    ||||||||||||||||| || |||||||| |||||||||||||    
T  13287503 ggatacggacacggacaccggacacgacacggacactaacacg 13287461  T

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Target: scaffold0116 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 9853 - 9897
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgcc 221  Q
    ||||||||||||||||| || |||||||||||||||  |||||||    
T  9853 ggatacggacacggacaccggacacgacatggacaccgacacgcc 9897  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 8753 - 8797
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgcc 221  Q
    ||||||||||||||||| || |||||||| ||||||| |||||||    
T  8753 ggatacggacacggacaccggacacgacacggacactgacacgcc 8797  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 46637 - 46681
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgcc 221  Q
    |||||||||||||||||||| |||||||| ||||| | |||||||    
T  46637 ggatacggacacggacatcggacacgacacggacaatgacacgcc 46681  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 10268590 - 10268546
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgcc 221  Q
    ||||||| |||||||||||||  |||||||||||||| |||||||    
T  10268590 ggatacgaacacggacatcgattacgacatggacactgacacgcc 10268546  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 16000120 - 16000076
Alignment:
Q  177 ggatacggacacggacatcgaacacgacatggacactaacacgcc 221  Q
    ||||||||||||||||| |||||||||||  |||||| |||||||    
T  16000120 ggatacggacacggacaccgaacacgacacagacactgacacgcc 16000076  T

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