View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4758_low_11 (Length: 239)
Name: NF4758_low_11
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4758_low_11 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 31683929 - 31683708
Alignment:
| Q |
18 |
ttttgagagtgacataggtctaccataattgtgtatgatatctggtatgcctaagtcgactacacatttaagagacatggaatttatgaagttgaaaatg |
117 |
Q |
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| T |
31683929 |
ttttgagagtgacataggtctaccataattgtgtatgatatctggtatgcctaagtcgactacacatttaagagacatggaatttatgaagttgaaaatg |
31683830 |
T |
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| Q |
118 |
tgtttccatatgtggctttgagctttgagcaaatttgaagcaacattatctccatgttgggattccatacttgcaagctacttgaattcgatcaactagt |
217 |
Q |
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| T |
31683829 |
tgtttccatatgtggctttgagctttgagcaaatttgaagcaacattatctccatgttgggattccatacttgctagctacttgaattcgatcaactagt |
31683730 |
T |
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| Q |
218 |
tgcttattatatggctaacatt |
239 |
Q |
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| T |
31683729 |
tgcttattatatggctaacatt |
31683708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 31702468 - 31702292
Alignment:
| Q |
18 |
ttttgagagtgacataggtctaccataattgtgtatgatatctggtatgcctaagtcgactacacatttaagagacatggaatttatgaagttgaaaatg |
117 |
Q |
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|||||||||||| || ||| | |||||||||||||||||||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||||||| |
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| T |
31702468 |
ttttgagagtgatatgggtttgccataattgtgtatgatatcaggtatgcctaaatcaaccacacatttaagggacatggaatttatgaagttgaaaatg |
31702369 |
T |
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| Q |
118 |
tgtttccatatgtggctttgagctttgagcaaatttgaagcaacattatctcca---tgttgggattccatacttgc |
191 |
Q |
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| T |
31702368 |
tgattccatatgtggctttgagctttgagcaaattggaagtaacattttcttcatttttttgggattccatacttgc |
31702292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 31710902 - 31710714
Alignment:
| Q |
18 |
ttttgagagtgacataggtctaccataattgtgtatgatatctggtatgcctaagtcgactacacatttaagagacatggaatttatgaagttgaaaatg |
117 |
Q |
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| T |
31710902 |
ttttgagagtggtatgggtttgccatagttgtgtatgatatctggtatgcctaagtcaactacacatttaagtgacatggaatttatgaagttaaacatg |
31710803 |
T |
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| Q |
118 |
tgtttccatatgtggctttgagctttgagcaaatttgaagcaacattatctccatgttgggattccatacttgcaagctacttgaattc |
206 |
Q |
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| T |
31710802 |
tgattccatacatggctttgagctttgagcaaattggaagcaacctgctctatattttgggattccatacttacttgctacttgaattc |
31710714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 46 - 191
Target Start/End: Complemental strand, 31734280 - 31734132
Alignment:
| Q |
46 |
ttgtgtatgatatctggtatgcctaagtcgactacacatttaagagacatggaatttatgaagttgaaaatgtgtttccatatgtggctttgagctttga |
145 |
Q |
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| T |
31734280 |
ttgtgtataatatctggtatgcctaagtcaactacacatttaagcgacattgaatttatgaagttgaaaatgtgattccatacgtgactttgagccttga |
31734181 |
T |
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| Q |
146 |
gcaaatttgaagcaacattatctcc---atgttgggattccatacttgc |
191 |
Q |
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| T |
31734180 |
gcaaattggaagcaacattctcttcattattttgggattccatacttgc |
31734132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 31713900 - 31713768
Alignment:
| Q |
18 |
ttttgagagtgacataggtctaccataattgtgtatgatatctggtatgcctaagtcgactacacatttaagagacatggaatttatgaagttgaaaatg |
117 |
Q |
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|||||| |||| ||| ||| | ||||| |||||||| ||||| ||||| |||||||| |||||||| ||||| ||||||||||||||||||||| |||| |
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| T |
31713900 |
ttttgaaagtggcatgggtttgccatagttgtgtataatatcaggtattcctaagtcaactacacacttaagtgacatggaatttatgaagttgcaaata |
31713801 |
T |
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| Q |
118 |
tgtttccatatgtggctttgagctttgagcaaa |
150 |
Q |
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| T |
31713800 |
tgattccatatgtggctttgagctttaagcaaa |
31713768 |
T |
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