View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4758_low_13 (Length: 216)

Name: NF4758_low_13
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4758_low_13
NF4758_low_13
[»] chr3 (1 HSPs)
chr3 (21-197)||(13226007-13226179)
[»] chr7 (4 HSPs)
chr7 (123-197)||(18960246-18960320)
chr7 (21-82)||(18992021-18992082)
chr7 (123-197)||(18992188-18992262)
chr7 (21-82)||(18960113-18960174)
[»] chr4 (1 HSPs)
chr4 (21-82)||(11188980-11189041)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 13226007 - 13226179
Alignment:
Q  21 catttgcgaagtaactggagttatttttccattcccattctaaaagttcttatgtgtttctannnnnnnagagaccctgaaaaatgtaaannnnnnnnnn 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||| ||||||||||||              
T  13226007 catttgcgaagtaactggagttatttttccattcccattctaaaagttcttatgtgtttctaccccccccgagaccccgaaaaatgtaaatttttttt-- 13226104  T
Q  121 nncttaggaacacatatacatataagatttatcactacaacaagcataatggtaatccccccattaacacagaattt 197  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13226105 --cttaggaacacatatacatataagatttatcactacaacaagcataatggtaatccccccattaacacagaattt 13226179  T

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Target: chr7 (Bit Score: 63; Significance: 1e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 18960246 - 18960320
Alignment:
Q  123 cttaggaacacatatacatataagatttatcactacaacaagcataatggtaatccccccattaacacagaattt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||    
T  18960246 cttaggaacacatatacatataagatttatcactacaacaagcataatggtaatccatccattaacacataattt 18960320  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 18992021 - 18992082
Alignment:
Q  21 catttgcgaagtaactggagttatttttccattcccattctaaaagttcttatgtgtttcta 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18992021 catttgcgaagtaactggagttatttttccattcccattctaaaagttcttatgtgtttcta 18992082  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 18992188 - 18992262
Alignment:
Q  123 cttaggaacacatatacatataagatttatcactacaacaagcataatggtaatccccccattaacacagaattt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||| |||||    
T  18992188 cttaggaacacatatacatataagatttatcactacaacaagcataatggtaatccatctattaacacataattt 18992262  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 18960113 - 18960174
Alignment:
Q  21 catttgcgaagtaactggagttatttttccattcccattctaaaagttcttatgtgtttcta 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  18960113 catttgcgaagtaactggagttatttttccattcccattctaaaaattcttatgagtttcta 18960174  T

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Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 11188980 - 11189041
Alignment:
Q  21 catttgcgaagtaactggagttatttttccattcccattctaaaagttcttatgtgtttcta 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11188980 catttgcgaagtaactggagttatttttccattcccattctaaaagttcttatgtgtttcta 11189041  T

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