View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4758_low_2 (Length: 512)
Name: NF4758_low_2
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4758_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 49 - 495
Target Start/End: Complemental strand, 11002890 - 11002441
Alignment:
| Q |
49 |
actcattctgtttcttcagaaattttggaaggaaaaacacaacttcgtgataaaatgactcctctttctgatgatacaagtcacgaatttagtgactctt |
148 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11002890 |
actcattctgtttctacaaaaattttggaaggaaaaacacaacttcgtgataaaatggctcctctttctgatgatacaagtcacgaatttagtgactctt |
11002791 |
T |
|
| Q |
149 |
atttttcaatagatttgaataagtcttattcaacaaatcatgattttagaagtcagatacgaaatgaagttaatagtgattacattaaccggagtgttat |
248 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11002790 |
atttttaaatagatttgaataagtcttattcaacaaatcatgattttagaagtcagatatgaaatgaagttaatagtgattacaataaccggagtgttgc |
11002691 |
T |
|
| Q |
249 |
atcaagtaattcagggcaaggtgaagaagaagaacgaatctgcgtggtttattattggctaaaaaaccatgcacacaaggataaagtgaacgcagcattt |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
11002690 |
atcaagtaattcagggcaaggtgaagaagaagaacgaattggcgtggttaattattggctaaaaaaccatccacacaaggataaagtgaatgcagcattt |
11002591 |
T |
|
| Q |
349 |
ttcaacggtggaagtgattttgaagaatca---cgtcagaaagtggtagtgaaaaatcccaaagaaagaatggcaaagtggcctgttaaagatcaaacaa |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11002590 |
ttcaacggtggaagtgattttgaagaatcacgtcgtcagaaagtggtagtgaaaaatcccaaagaaagaatggcaaagtggcctgttaacgatcaaacaa |
11002491 |
T |
|
| Q |
446 |
ccagcagactagagtcagtaagttcaactgcactagtggatgccaaacat |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11002490 |
ccagcagactagagtcagtaagttcaactgcactagtggatgccaaacat |
11002441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 11003265 - 11003215
Alignment:
| Q |
1 |
atacagttattaagatttgttttcattttcgtattagaaggatgaccgact |
51 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11003265 |
atacagttagtaagatttgttttcattttcgtattagaaggatgaccgact |
11003215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7022595 - 7022549
Alignment:
| Q |
1 |
atacagttattaagatttgttttcattttcgtattagaaggatgacc |
47 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7022595 |
atacagttgctaagatttgttttcattttcgtatttaaaggatgacc |
7022549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 57 - 482
Target Start/End: Original strand, 37083100 - 37083543
Alignment:
| Q |
57 |
tgtttcttcagaaattttggaaggaaaaacacaacttcgtgataaaatgactcctctttctgatgatac---------------aagtcacgaatttagt |
141 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
37083100 |
tgtttcttcagaaattttggaaggaataactccacttcgtgataaaatgactcctctttctgatgatactagtccaccaccatcaagtcaccaatttagt |
37083199 |
T |
|
| Q |
142 |
gactcttatttttcaatagatttgaataagtcttattcaacaaatcatgattttagaagtcagatacgaaatgaagttaatagtgattacattaaccgga |
241 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37083200 |
gactcgtatttttcgatagatttgaataagtcttattcaacaaatcatgatcttagaagtcatatacgaaaagaagttaatagtgattacattaaccgga |
37083299 |
T |
|
| Q |
242 |
gtgttatatcaagtaattcagggcaaggtgaag---aagaagaacgaatctgcgtggtttattattggctaaaaaaccatgcacacaaggataaagtgaa |
338 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
37083300 |
gtgttgtatcaagtaattcagggcaaggtgaagaagaagaagaacgaatcggcgtggttaattattggctaaaaaaccatccacacaaggataaagcgaa |
37083399 |
T |
|
| Q |
339 |
cgcagcatttttcaacggtggaagtgattttgaagaatcacgtcagaaagtggtagtgaaaaatcccaaagaaagaatggcaaagtggcctgttaaagat |
438 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||| ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
37083400 |
tgcagcatttttcaaaggtggaagtgattttgaagaatcgcgtacgaacgtggtagtgaaaaattccaaagaaagatcggcaaagtggcatgttaaagat |
37083499 |
T |
|
| Q |
439 |
caaacaaccagcagactagagtcagtaagttcaactgcactagt |
482 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
37083500 |
caaacaaccagcacagtagagtcagtaagttcaactacactagt |
37083543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University