View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4758_low_9 (Length: 247)

Name: NF4758_low_9
Description: NF4758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4758_low_9
NF4758_low_9
[»] chr5 (3 HSPs)
chr5 (146-242)||(31683323-31683425)
chr5 (148-182)||(29463139-29463173)
chr5 (148-182)||(42643118-42643152)
[»] chr8 (2 HSPs)
chr8 (148-182)||(12284163-12284197)
chr8 (148-182)||(39211185-39211219)
[»] chr3 (5 HSPs)
chr3 (150-182)||(10811281-10811313)
chr3 (148-182)||(9753362-9753396)
chr3 (148-182)||(13778576-13778610)
chr3 (153-182)||(27089866-27089895)
chr3 (150-182)||(53870754-53870786)
[»] chr7 (2 HSPs)
chr7 (148-182)||(31674949-31674983)
chr7 (148-182)||(41650849-41650883)
[»] chr2 (3 HSPs)
chr2 (148-182)||(40443193-40443227)
chr2 (148-182)||(40504370-40504404)
chr2 (150-182)||(38821510-38821542)
[»] chr1 (2 HSPs)
chr1 (148-182)||(611529-611563)
chr1 (148-180)||(19055580-19055612)
[»] chr4 (2 HSPs)
chr4 (150-182)||(37060461-37060493)
chr4 (150-178)||(56557877-56557905)


Alignment Details
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 31683425 - 31683323
Alignment:
Q  146 gtacaagttgtcaacaaaaatggttgttcaaataaca-----actcacagtaatagtgtgcaaaattcaatgattgataa-ccttttaactttttaccct 239  Q
    |||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||    
T  31683425 gtacaagttgtcaacaaaaatggttgttcaaataacactctgactcacagtaatagtgtgcaaaattcaataattgataacccttttaactttttactct 31683326  T
Q  240 atg 242  Q
    |||    
T  31683325 atg 31683323  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 29463139 - 29463173
Alignment:
Q  148 acaagttgtcaacaaaaatggttgttcaaataaca 182  Q
    |||||||||||||||||||||||||||||||||||    
T  29463139 acaagttgtcaacaaaaatggttgttcaaataaca 29463173  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 42643152 - 42643118
Alignment:
Q  148 acaagttgtcaacaaaaatggttgttcaaataaca 182  Q
    ||||||||||||||||||| |||||||||||||||    
T  42643152 acaagttgtcaacaaaaatagttgttcaaataaca 42643118  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 12284197 - 12284163
Alignment:
Q  148 acaagttgtcaacaaaaatggttgttcaaataaca 182  Q
    |||||||||||||||||||||||||||||||||||    
T  12284197 acaagttgtcaacaaaaatggttgttcaaataaca 12284163  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 39211185 - 39211219
Alignment:
Q  148 acaagttgtcaacaaaaatggttgttcaaataaca 182  Q
    |||||||||||||||||||| ||||||||||||||    
T  39211185 acaagttgtcaacaaaaatgattgttcaaataaca 39211219  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 10811281 - 10811313
Alignment:
Q  150 aagttgtcaacaaaaatggttgttcaaataaca 182  Q
    |||||||||||||||||||||||||||||||||    
T  10811281 aagttgtcaacaaaaatggttgttcaaataaca 10811313  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 9753362 - 9753396
Alignment:
Q  148 acaagttgtcaacaaaaatggttgttcaaataaca 182  Q
    |||||||||||||||||||| ||||||||||||||    
T  9753362 acaagttgtcaacaaaaatgattgttcaaataaca 9753396  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 13778576 - 13778610
Alignment:
Q  148 acaagttgtcaacaaaaatggttgttcaaataaca 182  Q
    |||| ||||||||||||||||||||||||||||||    
T  13778576 acaaattgtcaacaaaaatggttgttcaaataaca 13778610  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 182
Target Start/End: Complemental strand, 27089895 - 27089866
Alignment:
Q  153 ttgtcaacaaaaatggttgttcaaataaca 182  Q
    ||||||||||||||||||||||||||||||    
T  27089895 ttgtcaacaaaaatggttgttcaaataaca 27089866  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 53870786 - 53870754
Alignment:
Q  150 aagttgtcaacaaaaatggttgttcaaataaca 182  Q
    ||||||||||||||||||||| |||||||||||    
T  53870786 aagttgtcaacaaaaatggttattcaaataaca 53870754  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 31674983 - 31674949
Alignment:
Q  148 acaagttgtcaacaaaaatggttgttcaaataaca 182  Q
    |||||||||||||||||||| ||||||||||||||    
T  31674983 acaagttgtcaacaaaaatgattgttcaaataaca 31674949  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 41650849 - 41650883
Alignment:
Q  148 acaagttgtcaacaaaaatggttgttcaaataaca 182  Q
    |||||||||||||||||||| ||||||||||||||    
T  41650849 acaagttgtcaacaaaaatgattgttcaaataaca 41650883  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 40443193 - 40443227
Alignment:
Q  148 acaagttgtcaacaaaaatggttgttcaaataaca 182  Q
    ||||||| |||||||||||||||||||||||||||    
T  40443193 acaagttatcaacaaaaatggttgttcaaataaca 40443227  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 40504370 - 40504404
Alignment:
Q  148 acaagttgtcaacaaaaatggttgttcaaataaca 182  Q
    ||||||| |||||||||||||||||||||||||||    
T  40504370 acaagttatcaacaaaaatggttgttcaaataaca 40504404  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 38821510 - 38821542
Alignment:
Q  150 aagttgtcaacaaaaatggttgttcaaataaca 182  Q
    ||||||||||||||||| |||||||||||||||    
T  38821510 aagttgtcaacaaaaattgttgttcaaataaca 38821542  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 611563 - 611529
Alignment:
Q  148 acaagttgtcaacaaaaatggttgttcaaataaca 182  Q
    |||||||||||||||||||||||| ||||||||||    
T  611563 acaagttgtcaacaaaaatggttgctcaaataaca 611529  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 19055580 - 19055612
Alignment:
Q  148 acaagttgtcaacaaaaatggttgttcaaataa 180  Q
    ||||||| |||||||||||||||||||||||||    
T  19055580 acaagttatcaacaaaaatggttgttcaaataa 19055612  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 37060461 - 37060493
Alignment:
Q  150 aagttgtcaacaaaaatggttgttcaaataaca 182  Q
    ||||||||||||||||||||| |||||||||||    
T  37060461 aagttgtcaacaaaaatggttattcaaataaca 37060493  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 178
Target Start/End: Original strand, 56557877 - 56557905
Alignment:
Q  150 aagttgtcaacaaaaatggttgttcaaat 178  Q
    |||||||||||||||||||||||||||||    
T  56557877 aagttgtcaacaaaaatggttgttcaaat 56557905  T

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