View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4759-Insertion-1 (Length: 966)
Name: NF4759-Insertion-1
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4759-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 533; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 79 - 755
Target Start/End: Original strand, 7881527 - 7882196
Alignment:
| Q |
79 |
ttacatttttcaatgaggaacgatccaatgcaaagtgcaagaatgaagaaatgagatctttgattttgctactcgatcctccgattcagagatgaaaagg |
178 |
Q |
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| T |
7881527 |
ttacatttttcaatgaggaacgatccaatgcaaaatgcaagaatgaagaaatgagatctttgattttgctactcgatcctccgattcagagatgaaaagg |
7881626 |
T |
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| Q |
179 |
gtaccagcatttgcctctacttttctttcttcctttttgtgtctctcactgtggaaccaaatgaaccactttcttcattgttattcttcctcaattttga |
278 |
Q |
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| T |
7881627 |
gtaccagcatttgcctctacttttctttcttcctttttgtgtctctcactgtggaaccaaatgaaccactttctttattttttttcttcctcaattttga |
7881726 |
T |
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| Q |
279 |
agataaaaaattgagttttacgaaaaccccacaatgaaaaagatggtttttgctttactcaat-ccttcatttgaaatccttttgttatggtttctctct |
377 |
Q |
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| T |
7881727 |
agataaaaaattgagttttacgaaaaccccacaatgaaaaagatggtttttgctttactcaatcccttcatttgaaatccttttgttatggtttctctct |
7881826 |
T |
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| Q |
378 |
ctacaacctgtctctnnnnnnnnnnnnnntgggagtggtggtactggtagtgtagttcgagacagaacaactaaggtaaaaacaaaaattgttattgtca |
477 |
Q |
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| T |
7881827 |
ctacaacctgtctctagagagagagagagtgggagtgg------tggtagtgtagttcaagacagaacaactaaggtaaaaacaaaaaatgttattgtca |
7881920 |
T |
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| Q |
478 |
catttgtaatttgaaaaaatgttaatcaatactattagcaactaactaggattttttgttcaaaaagacaagaggaaaaacacttggtgaatgttgattg |
577 |
Q |
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| T |
7881921 |
catttgtaatttgaaaaaatgttaattaatactattagcaactaactaggattttttgttcaaaaagacaagaggaaaaacacttggtgaatgttgattg |
7882020 |
T |
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| Q |
578 |
agtagaattacttcattagtttcttaatgattgggatgacttgcatagtgaccaaaattgttactagaaactacaaagtactactaatttgtgaacatat |
677 |
Q |
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| T |
7882021 |
agtagaattacttcattagtttcttaatcattgggatgacttgcatagtgaccaaaattgttactagaaactacaaagtaccactaatttgtgaacatat |
7882120 |
T |
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| Q |
678 |
gatatcatttacgcatgactcttcaaattaaatttattgatctgactaagaccataatagatgggcaaaacattattt |
755 |
Q |
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| T |
7882121 |
gatatcttttacgcacgactgttcaaatt-aatttattgatctgactaagatcataatagat-ggtaaaacattattt |
7882196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 753 - 907
Target Start/End: Original strand, 7882269 - 7882422
Alignment:
| Q |
753 |
ttttaccatctaatttaaatggtttttagagtacaaactattattattataagagaaatggtaacggagtgtctttaaagtatttgtttaaaagtttaaa |
852 |
Q |
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| T |
7882269 |
ttttaccatctaatttaaatg-tttttagagtacgaactattattattataagagaaattgtaagag-gtgtccttaaggcatttgtttaaaagtttaaa |
7882366 |
T |
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| Q |
853 |
gtaagaat-ttatgttgaaaattgtgcattccaaacgttgaaataacaaaaagtaa |
907 |
Q |
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| T |
7882367 |
gtaaaaaaattctgttgaaaattgtgcattcaaaacgttgaaataacaaaaagtaa |
7882422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 860 - 908
Target Start/End: Original strand, 30833446 - 30833494
Alignment:
| Q |
860 |
tttatgttgaaaattgtgcattccaaacgttgaaataacaaaaagtaac |
908 |
Q |
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| T |
30833446 |
tttatcttgaaaattgtgcattcaacacattgaaataacaaaaagtaac |
30833494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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