View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4759-Insertion-11 (Length: 90)
Name: NF4759-Insertion-11
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4759-Insertion-11 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 83; Significance: 6e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 6e-40
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 24485012 - 24484930
Alignment:
| Q |
8 |
tttttctctatggattttgttaactccacaggtgaaactgatgagtataaagatattgttgaaaatcttgtgagagcaatagg |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24485012 |
tttttctctatggattttgttaactccacaggtgaaactgatgagtataaagatattgttgaaaatcttgtgagagcaatagg |
24484930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 24468513 - 24468431
Alignment:
| Q |
8 |
tttttctctatggattttgttaactccacaggtgaaactgatgagtataaagatattgttgaaaatcttgtgagagcaatagg |
90 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||| ||||||||| |
|
|
| T |
24468513 |
tttttctccatggattttgttaactctgcaggtgaaactgatgagtataaagatatagttgaaagtcttatgacagcaatagg |
24468431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 3e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 31130052 - 31130134
Alignment:
| Q |
8 |
tttttctctatggattttgttaactccacaggtgaaactgatgagtataaagatattgttgaaaatcttgtgagagcaatagg |
90 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| |||||||| |||||||| |||||||| |
|
|
| T |
31130052 |
tttttctctatggattttgttaactctgcaggtgaaactgatgaatataaaggtatagttgaaaaccttgtgagggcaatagg |
31130134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 5e-22
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 31137142 - 31137058
Alignment:
| Q |
6 |
catttttctctatggattttgttaactccacaggtgaaactgatgagtataaagatattgttgaaaatcttgtgagagcaatagg |
90 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| ||||||||||| ||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
31137142 |
catttttttctatggattttgttaactctgcaggagaaactgatgaatataaaggtataattgaaaatcttgtgagagcaatagg |
31137058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-22
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 31151897 - 31151981
Alignment:
| Q |
6 |
catttttctctatggattttgttaactccacaggtgaaactgatgagtataaagatattgttgaaaatcttgtgagagcaatagg |
90 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| ||||||||||| ||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
31151897 |
catttttttctatggattttgttaactctgcaggagaaactgatgaatataaaggtataattgaaaatcttgtgagagcaatagg |
31151981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University